[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 701 items for (author: ma & yb)

EMDB-51820:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

EMDB-51899:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52095:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52299:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9h3g:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9h6i:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

PDB-9hes:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

PDB-9hmw:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9qej:
Cryo-EM structure of the Importin beta:Importin7:Histone H1.0 complex
Method: single particle / : Neumann P

PDB-9qf0:
Cryo-EM structure of the mportin7:Histone H1.0 complex
Method: single particle / : Neumann P, Dickmanns A

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pni:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

PDB-9pnn:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pnu:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq2:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq3:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-53008:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

PDB-9qcc:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

EMDB-55504:
Nonameric Ena1C ring of Bacillus cereus
Method: single particle / : Sleutel M, Remaut H

EMDB-49740:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49741:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49742:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

PDB-9nrx:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nry:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nrz:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T

EMDB-60393:
Cryo-EM structure of AbCapV filemant bound with 3',3'-cGAMP with extra phospholipid density
Method: single particle / : Kong JP, Li ZX, Ke SY, Xiao YB

EMDB-61417:
Cryo-EM structure of AbCapV dimer, apo form
Method: single particle / : Kong JP, Li ZX, Ke SY, Wu WQ, Xiao YB

EMDB-61419:
Cryo-EM structure of AbCapV tetramer, intermediate form
Method: single particle / : Kong JP, Li ZX, Ke SY, Wu WQ, Xiao YB

EMDB-51643:
State 2 MAP 1 SETD2 bound to proximal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54537:
State 1 MAP3 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9gw2:
State 2 MAP 1 SETD2 bound to proximal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9s3g:
State 1 MAP3 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-62291:
Cryo-EM structure of AbCapV S58A filament bound with 3'3'-cGAMP with extra phospholipid density
Method: single particle / : Kong JP, Li ZX, Wu WQ, Xiao YB

EMDB-54247:
State 2 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54399:
State 3 MAP 1 SETD2 bound to distal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54400:
State 3 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54425:
State 3 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to distal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54538:
State 1 MAP1 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54541:
State 1 MAP2 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54542:
State 1 MAP4 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rtn:
State 2 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rzc:
State 3 MAP 1 SETD2 bound to distal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rzd:
State 3 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9s0u:
State 3 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to distal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-64812:
Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64813:
Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more