[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 339 items for (author: loo & ja)

EMDB-77065:
CryoEM structure of AdhE spirosome from Clostridium thermocellum uncovered by visual proteomics.
Method: helical / : Agdanowski MP, Rodriguez JA, Moser T, Evans JE

PDB-13he:
CryoEM structure of AdhE spirosome from Clostridium thermocellum uncovered by visual proteomics.
Method: helical / : Agdanowski MP, Rodriguez JA, Moser T, Evans JE

EMDB-54060:
Cryo-EM structure of the CorM filament in the presence of CorR from cyanobacterium Anabaena sp. PCC 7120
Method: single particle / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Schur FKM, Loose M

EMDB-54061:
Cryo-EM structure of the CorM filament from cyanobacterium Anabaena sp. PCC 7120
Method: single particle / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Schur FKM, Loose M

EMDB-54062:
Cryo-EM structure of the delta1-40 CorM filament from cyanobacterium Anabaena sp. PCC 7120
Method: single particle / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Schur FKM, Loose M

EMDB-55454:
Cryo-electron tomogram of cyanobacterium Anabaena sp. PCC 7120 with putative CorM filaments (Isonet-processed)
Method: electron tomography / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Zens B, Weiss GL, Schur FKM, Loose M

EMDB-55455:
Cryo-electron tomogram of delta-cse mutant cyanobacterium Anabaena sp. PCC 7120 with putative CorM filaments
Method: electron tomography / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Zens B, Weiss GL, Schur FKM, Loose M

PDB-9rmi:
Cryo-EM structure of the CorM filament in the presence of CorR from cyanobacterium Anabaena sp. PCC 7120
Method: single particle / : Springstein BL, Javoor MG, Megrian D, Hajdu R, Hanke DM, Schur FKM, Loose M

EMDB-74113:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-74114:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zen:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zeo:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-71459:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71460:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71461:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71462:
Negative stain EM map of polyclonal serum from mouse immunized with H5 TX24-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71463:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71464:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71465:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71466:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71467:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71468:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71469:
Negative stain EM map 4 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71470:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71471:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71472:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71473:
Negative stain EM map 4 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-47447:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

PDB-9e2a:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

EMDB-49949:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49950:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49951:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz3:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz4:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz5:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-72396:
CryoEM structure of alpha-synuclein fibril induced by psychosine
Method: helical / : Jenkins RA, Sun CQ, Sawaya MR, Rodriguez JA

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2t:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2u:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-46649:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9d8v:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more