[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,063 items for (author: li & yt)

EMDB-70888:
Structure of Geobacillus stearothermophilus RNase P ribozyme
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70891:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70892:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70893:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70896:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70897:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+
Method: single particle / : Lee YT, Skeparnias I, Stagno JR, Wang YX

EMDB-70933:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70935:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70936:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70994:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 1)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70995:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 2)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70996:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 3)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-69005:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

EMDB-69006:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

EMDB-70937:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (Consensus)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70940:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with loop-back 5' leader
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-74435:
Dimer of BrxC-BrxB fusion complexed with PglZ from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

PDB-9zn5:
Hybrid model of a dimer of BrxC-BrxB fusion complexed with PglZ from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

EMDB-56033:
CryoEM structure of coxsackievirus B1 virus-like particle with VP4 deletion
Method: single particle / : Levanova AL, Guryanov S, Ahmad KLL, Butcher SJ

PDB-9tkm:
CryoEM structure of coxsackievirus B1 virus-like particle with VP4 deletion
Method: single particle / : Levanova AL, Guryanov S, Ahmad KLL, Butcher SJ

EMDB-67269:
ADP-Glucose Pyrophosphorylase
Method: single particle / : Wu YT, Lin HJ, Fan MR

EMDB-67276:
ATP-bound ADP-Glucose Pyrophosphorylase
Method: single particle / : Wu YT, Lin HJ, Fan MR

EMDB-67271:
3PGA-bound ADP-Glucose Pyrophosphorylase
Method: single particle / : Wu YT, Lin HJ, Fan MR

EMDB-67270:
Pi-bound ADP-Glucose Pyrophosphorylase
Method: single particle / : Wu YT, Lin HJ, Fan MR

EMDB-67274:
ADPG-bound ADP-Glucose Pyrophosphorylase
Method: single particle / : Wu YT, Lin HJ, Fan MR

EMDB-65107:
Raw consensus map of Type II-A CRISPR integrase prespacer catching complex, State I
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-65108:
Type I-A CRISPR integrase prespacer catching complex, State II
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-65109:
Type II-A CRISPR integrase pre-integration complex
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-63364:
Integrin alpha-v beta-3 in complex with Trimucrin
Method: single particle / : Wang YT, Chuang WJ

EMDB-54897:
Structure of the honeybee GABAA RDL receptor with GABA and Abamectin
Method: single particle / : Laboure T, Nury H

PDB-9she:
Structure of the honeybee GABAA RDL receptor with GABA and Abamectin
Method: single particle / : Laboure T, Nury H

EMDB-53343:
Cryo-EM structure of aquaporin 3 at pH 8.0
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-53344:
Cryo-EM structure of aquaporin 3 at pH 5.5
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-53345:
Cryo-EM structure of aquaporin 3 at pH 8.0 with hydrogen peroxide
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsx:
Cryo-EM structure of aquaporin 3 at pH 8.0
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsy:
Cryo-EM structure of aquaporin 3 at pH 5.5
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsz:
Cryo-EM structure of aquaporin 3 at pH 8.0 with hydrogen peroxide
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-54906:
Structure of the honeybee GABAA RDL receptor with GABA
Method: single particle / : Laboure T, Nury H

EMDB-54929:
Structure of the honeybee GABAA RDL receptor apo state
Method: single particle / : Laboure T, Nury H

EMDB-54930:
Structure of the honeybee GABAA RDL receptor with Chrodrimanin B
Method: single particle / : Laboure T, Nury H

PDB-9sho:
Structure of the honeybee GABAA RDL receptor with GABA
Method: single particle / : Laboure T, Nury H

PDB-9sio:
Structure of the honeybee GABAA RDL receptor apo state
Method: single particle / : Laboure T, Nury H

PDB-9siq:
Structure of the honeybee GABAA RDL receptor with Chrodrimanin B
Method: single particle / : Laboure T, Nury H

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-46785:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more