[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,458 items for (author: ley & re)

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-73869:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 25
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73870:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody G12
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73871:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 15
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73872:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73873:
Cryo-EM structure of Secreted extracellular protein A (SepA) from Shigella flexneri complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73874:
Cryo-EM structure of Protein involved in colonization (Pic) from Enteroaggregative Escherichia coli complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-72969:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72970:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72971:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72973:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72985:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72986:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72987:
NN39-25 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72988:
NN39-171 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72989:
V634-136 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72990:
V634-136 UCA Fab in complex with HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72991:
V645-158 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72992:
HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72993:
HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72994:
HIV-1 Env del8-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yho:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yhq:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yhr:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yht:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yib:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yid:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yie:
NN39-25 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yif:
NN39-171 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yig:
V634-136 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yih:
V634-136 UCA Fab in complex with HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yii:
V645-158 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yij:
HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yik:
HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yil:
HIV-1 Env del8-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-53943:
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-54009:
Manikomycin bound to the Escherichia coli 70S ribosome
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

PDB-9rfw:
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

PDB-9rja:
Manikomycin bound to the Escherichia coli 70S ribosome
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-70721:
TMPRSS2 (S441A) bound to the HCoV-NL63 S2'region genetically fused to the HCoV-HKU1 RBD
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70722:
TMPRSS2 S441A in complex with the H1H7 Fab and anti-kappa light chain nanobody
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73656:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73657:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (S2 local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73786:
HCoV-NL63 S2' peptide bound to TMPRSS2 S441A (complexed with the H1H7 Fab and an anti-kappa-nanobody)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more