[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,424 items for (author: lee & jo)

EMDB-73703:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73704:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73705:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73707:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex (RECC), tRNA focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-64468:
Subtomogram averaging of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: subtomogram averaging / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64469:
Subtomogram averaging of in vitro assembly product of untagged D13, Twister
Method: subtomogram averaging / : Kim SM, Jang YT

EMDB-64470:
Cryo-EM structure of in vitro assembly product of untagged D13, Twister
Method: single particle / : Kim SM, Jang YT

EMDB-64471:
Two interacting D13 trimers at mode I interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64472:
Two interacting D13 trimers at mode II interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64473:
Two interacting D13 trimers at mode III interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64474:
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64475:
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64476:
Cryo-EM structure of A17(1-16) peptide-bound D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64477:
Cryo-EM structure of A17(1-16) peptide-bound D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-80609:
Cryo-EM structure of the A17(1-16) peptide-bound N-terminal 17 residue truncated D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-26fe:
Cryo-EM structure of the A17(1-16) peptide-bound N-terminal 17 residue truncated D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9usx:
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9usy:
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9usz:
Cryo-EM structure of A17(1-16) peptide-bound D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9ut0:
Cryo-EM structure of A17(1-16) peptide-bound D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-65488:
Cryo-EM structure of LARS1:IARS1 complex
Method: single particle / : Kim Y, Kim JC, Kim DW, Kim J, Lee J, Kim S, Kang JY, Park HS

PDB-9w01:
Cryo-EM structure of LARS1:IARS1 complex
Method: single particle / : Kim Y, Kim JC, Kim DW, Kim J, Lee J, Kim S, Kang JY, Park HS

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-73706:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

PDB-9z0h:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2)
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72520:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72521:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72522:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72523:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5r:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5s:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5t:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5u:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-64749:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64751:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64752:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64761:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64777:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-65890:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80132:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK, Mishra S, Dalal A, Nureki O

PDB-25if:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more