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Structure paper

TitleStructures of in vitro assembly products of poxvirus scaffolding protein reveal transition from pre-assembly state to fully assembled scaffold
Journal, issue, pagesTo Be Published
Publish dateMay 2, 2025 (structure data deposition date)
AuthorsJang YT / Kim SM / Lee SN / Ryu BH / Jeong HS / Kang ES / Sul JH / Kim YH / Jo DG / Hyun JK
External linksSearch PubMed
MethodsEM (subtomogram averaging) / EM (single particle) / EM (tomography)
Resolution2.56 - 14.0 Å
Structure data

EMDB-64468: Subtomogram averaging of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: EM (subtomogram averaging) / Resolution: 14.0 Å

EMDB-64469: Subtomogram averaging of in vitro assembly product of untagged D13, Twister
Method: EM (subtomogram averaging) / Resolution: 13.0 Å

EMDB-64470: Cryo-EM structure of in vitro assembly product of untagged D13, Twister
Method: EM (single particle) / Resolution: 3.9 Å

64471

9usu

EMDB-64471, PDB-9usu:
Two interacting D13 trimers at mode I interface in Twister assembly
Method: EM (single particle) / Resolution: 2.9 Å

64472

9usv

EMDB-64472, PDB-9usv:
Two interacting D13 trimers at mode II interface in Twister assembly
Method: EM (single particle) / Resolution: 3.2 Å

64473

9usw

EMDB-64473, PDB-9usw:
Two interacting D13 trimers at mode III interface in Twister assembly
Method: EM (single particle) / Resolution: 3.1 Å

64474

9usx

EMDB-64474, PDB-9usx:
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: EM (single particle) / Resolution: 2.88 Å

64475

9usy

EMDB-64475, PDB-9usy:
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: EM (single particle) / Resolution: 3.7 Å

64476

9usz

EMDB-64476, PDB-9usz:
Cryo-EM structure of A17(1-16) peptide-bound D13 trimer from vaccinia virus
Method: EM (single particle) / Resolution: 2.56 Å

64477

9ut0

EMDB-64477, PDB-9ut0:
Cryo-EM structure of A17(1-16) peptide-bound D13 assembled into scaffold-like particles from vaccinia virus
Method: EM (single particle) / Resolution: 3.63 Å

80609

26fe

EMDB-80609, PDB-26fe:
Cryo-EM structure of the A17(1-16) peptide-bound N-terminal 17 residue truncated D13 trimer from vaccinia virus
Method: EM (single particle) / Resolution: 3.04 Å

EMDB-82614: Cryo-electron tomogram of in vitro assembly product of untagged D13, Twister
Method: EM (tomography)

EMDB-82617: Cryo-electron tomogram of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: EM (tomography)

Source
  • Vaccinia virus
  • orthopoxvirus vaccinia
KeywordsVIRAL PROTEIN / Vaccinia virus / Immature virion / D13 scaffold protein assembly / Cryo-EM

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