[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,646 items for (author: le & sn)

EMDB-71893:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-73816:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9pvm:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9z5i:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-82614:
Cryo-electron tomogram of in vitro assembly product of untagged D13, Twister
Method: electron tomography / : Kim SM, Jang YT, Hyun JK

EMDB-82617:
Cryo-electron tomogram of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: electron tomography / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-56124:
Asp2Cas12l-sgRNA bound to target DNA
Method: single particle / : Sasnauskas G, Tamulaitiene G, Urbaitis T, Gasiunas G

PDB-9tq4:
Asp2Cas12l-sgRNA bound to target DNA
Method: single particle / : Sasnauskas G, Tamulaitiene G, Urbaitis T, Gasiunas G

EMDB-64468:
Subtomogram averaging of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: subtomogram averaging / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64469:
Subtomogram averaging of in vitro assembly product of untagged D13, Twister
Method: subtomogram averaging / : Kim SM, Jang YT

EMDB-64470:
Cryo-EM structure of in vitro assembly product of untagged D13, Twister
Method: single particle / : Kim SM, Jang YT

EMDB-64471:
Two interacting D13 trimers at mode I interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64472:
Two interacting D13 trimers at mode II interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64473:
Two interacting D13 trimers at mode III interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64474:
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64475:
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64476:
Cryo-EM structure of A17(1-16) peptide-bound D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64477:
Cryo-EM structure of A17(1-16) peptide-bound D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-80609:
Cryo-EM structure of the A17(1-16) peptide-bound N-terminal 17 residue truncated D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-53558:
pro-TGF-beta1 in complex with the third TB Domain from Latent Transforming Growth Factor-beta Binding Protein-1
Method: single particle / : Biggin G, Snee M, Godwin A, Roseman A, Baldock C

PDB-9r3s:
pro-TGF-beta1 in complex with the third TB Domain from Latent Transforming Growth Factor-beta Binding Protein-1
Method: single particle / : Biggin G, Snee M, Godwin A, Roseman A, Baldock C

EMDB-67558:
Cryo-EM structure of ex vivo Sup35 prion fibrils from yeast carrying "strong" [PSI+] variant
Method: helical / : Chesnokov YM, Burtseva AD, Dergalev AA, Baimukhametov TN, Kushnirov VV, Popov VO, Boyko KM

PDB-21bq:
Cryo-EM structure of ex vivo Sup35 prion fibrils from yeast carrying "strong" [PSI+] variant
Method: helical / : Chesnokov YM, Burtseva AD, Dergalev AA, Baimukhametov TN, Kushnirov VV, Popov VO, Boyko KM

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G

EMDB-74415:
HSV-1 UL32 tripentamer
Method: single particle / : Bailey EJ, Devarkar SC, Xiong Y, Didychuk AL

EMDB-74418:
Human cytomegalovirus UL52 3-mer
Method: single particle / : Bailey EJ, Devarkar SC, Xiong Y, Didychuk AL

EMDB-74419:
Human cytomegalovirus UL52 4-mer
Method: single particle / : Bailey EJ, Devarkar SC, Xiong Y, Didychuk AL

EMDB-72934:
HCoV-HKU1 C S 2P in complex with H501-008 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72935:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72936:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72937:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72938:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72939:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygn:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygo:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygp:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygq:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygr:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-75946:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75947:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 1
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75949:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 2
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-76733:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

PDB-12sn:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

EMDB-76853:
HIV-1 Gag (CASP1NCSP2p6) assembled with core encapsidation signal - C1 symmetry
Method: single particle / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-76854:
HIV-1 Gag (CASP1NCSP2p6) assembled with core encapsidation signal - C6 symmetry
Method: single particle / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-76863:
HIV-1 Gag (CASP1NCSP2p6) assembled with core encapsidation signal - tomography map
Method: subtomogram averaging / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-76864:
HIV-1 Gag (CASP1NCSP2p6) assembled with dimerization signal - tomography map
Method: subtomogram averaging / : Hollmann NM, Ganser-Pornillos BK, Pornillos O, Summers MF

EMDB-56980:
focused refined map; 40S head with TC from human 48S PIC on mRNA (non-Kozak)
Method: single particle / : von Loeffelholz O, Klaholz B

EMDB-56981:
consensus map; human 48S PIC on Kozak mRNA with eIF1A W70A mutant
Method: single particle / : von Loeffelholz O, Klaholz B

EMDB-56982:
focused refined map; 40S body with eIF1A from human 48S PIC with eIF1A W70A mutant on Kozak mRNA
Method: single particle / : von Loeffelholz O, Klaholz B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more