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TitleCryoEM Structures of Native Quinol-Dependent Nitric Oxide Reductase in Resting and Quinol-Bound States.
Journal, issue, pagesACS Bio Med Chem Au, Vol. 6, Issue 2, Page 145-159, Year 2026
Publish dateApr 15, 2026
AuthorsFaisal T Khaja / Allegra Mboukou / Louie P Aspinall / Charlotte E Hawksworth / Robert R Eady / Svetlana V Antonyuk / Stephen P Muench / S Samar Hasnain /
PubMed AbstractThe membrane-bound quinol-dependent nitric oxide reductases (qNORs), which are members of the respiratory heme-copper oxidase superfamily, are of major importance to food production, environment, and ...The membrane-bound quinol-dependent nitric oxide reductases (qNORs), which are members of the respiratory heme-copper oxidase superfamily, are of major importance to food production, environment, and human health. They are unique to bacteria and catalyze N-N bond formation, converting nitric oxide (NO) to generate the enzymatic product, nitrous oxide (NO), in agricultural and pathogenic conditions. High-resolution qNOR structures have been reported from two bacterial species, in which the molecular size of the protein was increased by the insertion of apocytochrome b (BRIL) at the C-terminus to facilitate cryoEM structure determination. However, it remains uncertain how BRIL fusion alters the native structure of these metalloenzymes. Here, we present the first high-resolution structure of qNOR (qNOR) determined without a fusion tag at two different pH values, revealing structural differences near the catalytic core as well as overall conformational changes between the native and fusion-tagged structures. The native enzyme shows a bell-shaped pH dependence of enzymatic activity, like nitrite reductase, the preceding enzyme in the denitrification pathway, which generates the substrate NO. In addition, we report structures of qNOR bound to quinol and hydroxyquinol that provide valuable insight into the potential electron transfer pathway originating from Trp718 to the redox centers.
External linksACS Bio Med Chem Au / PubMed:42006251 / PubMed Central
MethodsEM (single particle)
Resolution2.4 - 3.1 Å
Structure data

EMDB-55213, PDB-9st9:
CryoEM structure of native quinol dependent Nitric Oxide Reductase at pH 6.5
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-55214, PDB-9sta:
CryoEM structure of native quinol dependent Nitric Oxide Reductase with HQE at pH 6.5
Method: EM (single particle) / Resolution: 2.4 Å

EMDB-56718, PDB-28pn:
CryoEM structure of native quinol dependent Nitric Oxide Reductase at pH 8.0 on gold grid.
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-56720, PDB-28pp:
CryoEM structure of native quinol dependent Nitric Oxide Reductase Arg720Ala variant at pH 6.5 on gold grid.
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-56721, PDB-28pq:
CryoEM structure of native quinol dependent Nitric Oxide Reductase Trp718Ala variant at pH 6.5 on gold grid.
Method: EM (single particle) / Resolution: 2.4 Å

EMDB-56722, PDB-28pr:
CryoEM structure of native quinol dependent Nitric Oxide Reductase Trp718Ala variant with quino at pH 6.5 on gold grid.
Method: EM (single particle) / Resolution: 2.4 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-CA:
Unknown entry

ChemComp-FE:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-LMT:
DODECYL-BETA-D-MALTOSIDE / detergent*YM

ChemComp-UQ5:
2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE

ChemComp-HQE:
benzene-1,4-diol

Source
  • achromobacter xylosoxidans (bacteria)
KeywordsMEMBRANE PROTEIN / quinol-dependent Nitric Oxide Reductase

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