[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 272 items for author: l. & li

PDB-5v93:
Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
Method: single particle / : Yang K, Chang JY, Cui Z, Li X, Meng R, Duan L, Thongchol J, Jakana J, Huwe C, Sacchettini J, Zhang J

PDB-5oqv:
Near-atomic resolution fibril structure of complete amyloid-beta(1-42) by cryo-EM
Method: helical / : Gremer L, Schoelzel D, Schenk C, Reinartz E, Labahn J, Ravelli R, Tusche M, Lopez-Iglesias C, Hoyer W, Heise H, Willbold D, Schroeder GF

PDB-5xwy:
Electron cryo-microscopy structure of LbuCas13a-crRNA binary complex
Method: single particle / : Zhang X, Wang Y, Ma J, Liu L, Li X, Li Z, You L, Wang J, Wang M

PDB-5xxb:
Large subunit of Toxoplasma gondii ribosome
Method: single particle / : Li Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5xxu:
Small subunit of Toxoplasma gondii ribosome
Method: single particle / : LI Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5xy3:
Large subunit of Trichomonas vaginalis ribosome
Method: single particle / : Li Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5xyi:
Small subunit of Trichomonas vaginalis ribosome
Method: single particle / : Li Z, Guo Q, Zheng L, Ji Y, Xie Y, Lai D, Lun Z, Suo X, Gao N

PDB-5wc3:
SpoIIIAG
Method: single particle / : Zeytuni N, Hong C, Worrall LJ, Huang RK, Yu Z, Strynadka NCJ

PDB-5xmi:
Cryo-EM Structure of the ATP-bound VPS4 mutant-E233Q hexamer (masked)
Method: single particle / : Sun S, Li L, Yang F, Wang X, Fan F, Li X, Wang H, Sui S

PDB-5xmk:
Cryo-EM structure of the ATP-bound Vps4 mutant-E233Q complex with Vta1 (masked)
Method: single particle / : Sun S, Li L, Yang F, Wang X, Fan F, Li X, Wang H, Sui S

PDB-5oac:
FLiP major capsid protein
Method: single particle / : De Colibus L, Stuart DI, Huiskonen JT

PDB-5ms1:
Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles
Method: single particle / : Hesketh EL, Meshcheriakova Y, Thompson RF, Lomonossoff GP, Ranson NA

PDB-5msh:
Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles
Method: single particle / : Hesketh EL, Meshcheriakova Y, Thompson RF, Lomonossoff GP, Ranson NA

PDB-5vy9:
S. cerevisiae Hsp104:casein complex, Middle Domain Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5w3f:
Yeast tubulin polymerized with GTP in vitro
Method: helical / : Howes SC, Geyer EA, LaFrance B, Zhang R, Kellogg EH, Westermann S, Rice LM, Nogales E

PDB-5w3h:
Yeast microtubule stabilized with epothilone
Method: helical / : Howes SC, Geyer EA, LaFrance B, Zhang R, Kellogg EH, Westermann S, Rice LM, Nogales E

PDB-5w3j:
Yeast microtubule stabilized with Taxol assembled from mutated tubulin
Method: helical / : Howes SC, Geyer EA, LaFrance B, Zhang R, Kellogg EH, Westermann S, Rice LM, Nogales E

PDB-5vxx:
Cryo-EM reconstruction of Neisseria gonorrhoeae Type IV pilus
Method: helical / : Wang F, Orlova A, Altindal T, Craig L, Egelman EH

PDB-5vxy:
Cryo-EM reconstruction of PAK pilus from Pseudomonas aeruginosa
Method: helical / : Wang F, Osinksi T, Orlova A, Altindal T, Craig L, Egelman EH

PDB-5vjh:
Closed State CryoEM Reconstruction of Hsp104:ATPyS and FITC casein
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vy8:
S. cerevisiae Hsp104-ADP complex
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vya:
S. cerevisiae Hsp104:casein complex, Extended Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5xjc:
Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
Method: single particle / : Zhang X, Yan C, Hang J, Finci IL, Lei J, Shi Y

PDB-5vkq:
Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc
Method: single particle / : Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Chen T, Jan LY, Jan YN, Cheng Y

PDB-5tby:
HUMAN BETA CARDIAC HEAVY MEROMYOSIN INTERACTING-HEADS MOTIF OBTAINED BY HOMOLOGY MODELING (USING SWISS-MODEL) OF HUMAN SEQUENCE FROM APHONOPELMA HOMOLOGY MODEL (PDB-3JBH), RIGIDLY FITTED TO HUMAN BETA-CARDIAC NEGATIVELY STAINED THICK FILAMENT 3D-RECONSTRUCTION (EMD-2240)
Method: single particle / : ALAMO L, WARE JS, PINTO A, GILLILAN RE, SEIDMAN JG, SEIDMAN CE, PADRON R

PDB-5uf6:
The 2.8 A Electron Microscopy Structure of Adeno-Associated Virus-DJ Bound by a Heparanoid Pentasaccharide
Method: single particle / : Xie Q, Spear JM, Noble AJ, Sousa DR, Meyer NL, Davulcu O, Zhang F, Linhardt RJ, Stagg SM, Chapman M

PDB-5np0:
Closed dimer of human ATM (Ataxia telangiectasia mutated)
Method: single particle / : Baretic D, Pollard HK, Fisher DI, Johnson CM, Santhanam B, Truman CM, Kouba T, Fersht AR, Phillips C, Williams RL

PDB-5np1:
Open protomer of human ATM (Ataxia telangiectasia mutated)
Method: single particle / : Baretic D, Pollard HK, Fisher DI, Johnson CM, Santhanam B, Truman CM, Kouba T, Fersht AR, Phillips C, Williams RL

PDB-5wsn:
Structure of Japanese encephalitis virus
Method: single particle / : Wang X, Zhu L, Li S, Yuan S, Qin C, Fry EE, Stuart ID, Rao Z

PDB-5ubq:
Cryo-EM structure of ciliary microtubule doublet
Method: single particle / : Ichikawa M, Liu D, Kastritis PL, Basu K, Bui KH

PDB-5ucy:
Cryo-EM map of protofilament of microtubule doublet
Method: single particle / : Ichikawa M, Liu D, Kastritis PL, Basu K, Bui KH

PDB-5v8f:
Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1
Method: single particle / : Yuan Z, Riera A, Bai L, Sun J, Spanos C, Chen ZA, Barbon M, Rappsilber J, Stillman B, Speck C, Li H

PDB-5uz7:
Volta phase plate cryo-electron microscopy structure of a calcitonin receptor-heterotrimeric Gs protein complex
Method: single particle / : Liang YL, Khoshouei M, Radjainia M, Zhang Y, Glukhova A, Tarrasch J, Thal DM, Furness SGB, Christopoulos G, Coudrat T, Danev R, Baumeister W, Miller LJ, Christopoulos A, Kobilka BK, Wootten D, Skiniotis G, Sexton PM

PDB-5uz9:
Cryo EM structure of anti-CRISPRs, AcrF1 and AcrF2, bound to type I-F crRNA-guided CRISPR surveillance complex
Method: single particle / : Chowdhury S, Carter J, Rollins MF, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B

PDB-5l35:
Cryo-EM structure of bacteriophage Sf6 at 2.9 Angstrom resolution
Method: single particle / : Zhao H, Tang L

PDB-5udb:
Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1
Method: single particle / : Yuan Z, Riera A, Bai L, Sun J, Spanos C, Chen ZA, Barbon M, Rappsilber J, Stillman B, Speck C, Li H

PDB-5ujm:
Structure of the active form of human Origin Recognition Complex and its ATPase motor module
Method: single particle / : Tocilj A, On K, Yuan Z, Sun J, Elkayam E, Li H, Stillman B, Joshua-Tor L

PDB-5h0r:
RNA dependent RNA polymerase ,vp4,dsRNA
Method: single particle / : Li X, Zhou N, Chen W, Zhu B, Wang X, Xu B, Wang J, Liu H, Cheng L

PDB-5h0s:
EM Structure of VP1A and VP1B
Method: single particle / : Li X, Zhou N, Xu B, Chen W, Zhu B, Wang X, Wang J, Liu H, Cheng L

PDB-5h4p:
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
Method: single particle / : Ma C, Wu S, Li N, Chen Y, Yan K, Li Z, Zheng L, Lei J, Woolford JL, Gao N

PDB-5h64:
Cryo-EM structure of mTORC1
Method: single particle / : Yang H, Wang J, Liu M, Chen X, Huang M, Tan D, Dong M, Wong CCL, Wang J, Xu Y, Wang H

PDB-5twv:
Cryo-EM structure of the pancreatic ATP-sensitive K+ channel SUR1/Kir6.2 in the presence of ATP and glibenclamide
Method: single particle / : Martin GM, Yoshioka C, Chen JZ, Shyng SL

PDB-5wte:
Cryo-EM structure for Hepatitis A virus full particle
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5wtf:
Cryo-EM structure for Hepatitis A virus empty particle
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5wth:
Cryo-EM structure for Hepatitis A virus complexed with FAB
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5wua:
Structure of a Pancreatic ATP-sensitive Potassium Channel
Method: single particle / : Li N, Wu JX, Chen L, Gao N

PDB-5me0:
Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112
Method: single particle / : Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil Carton D, Gualerzi C, Fucini P, Connell S

PDB-5me1:
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Method: single particle / : Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil Carton D, Gualerzi C, Fucini P, Connell S

PDB-5h1b:
Human RAD51 presynaptic complex
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

PDB-5h1c:
Human RAD51 post-synaptic complexes
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

Pages:

+
About EMN search

-
News

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more