[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 41 items for (author: kraus & jm)

EMDB-54584:
Arabidopsis thaliana TPLATE complex negative stain EM map
Method: single particle / : Kraus JM, Van Damme D, Pleskot R, Neubergerova M

EMDB-51701:
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #1
Method: electron tomography / : Kraus F, He Y, Swarup S, Overmyer KA, Jiang Y, Brenner J, Capitanio C, Bieber A, Jen A, Nightingale NM, Anderson BJ, Lee C, Paulo JA, Smith IR, Plitzko JM, Gygi SP, Schulman BA, Wilfling F, Coon JJ, Harper JW

EMDB-51702:
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #2
Method: electron tomography / : Kraus F, He Y, Swarup S, Overmyer KA, Jiang Y, Brenner J, Capitanio C, Bieber A, Jen A, Nightingale NM, Anderson BJ, Lee C, Paulo JA, Smith IR, Plitzko JM, Gygi SP, Schulman BA, Wilfling F, Coon JJ, Harper JW

EMDB-11493:
Subtomogram averaging of SARS-CoV-2 Spike Protein from unconcentrated virions: consensus structure of prefusion S trimers
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11494:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (3 closed RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11495:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (1 open RBD)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11496:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (2 open RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11497:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11498:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 2 Closed + 1 Weak RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-7908:
VIC170 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7909:
VIC169 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7910:
VIC167 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7911:
VIC166 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7912:
VIC165 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7914:
VIC1164 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7915:
VIC163 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7926:
VIC82 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7927:
VIC43 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7928:
VIC32 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7929:
VIC26 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7930:
VIC16 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7931:
VIC15 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7932:
VIC12 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7933:
VIC11 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7922:
VIC133 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7923:
VIC101 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7924:
VIC94 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7925:
VIC91 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7934:
VIC130 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7916:
VIC161 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7917:
VIC160 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7918:
VIC158 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7919:
VIC157 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7920:
VIC142 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7921:
VIC139 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-4016:
A 4.5 Angstrom structure of HIV-1 CA-SP1
Method: subtomogram averaging / : Schur FKM, Obr M, Hagen WJH, Wan W, Arjen JJ, Kirkpatrick JM, Sachse C, Kraeusslich HG, Briggs JAG

EMDB-4017:
A 4.2 Angstrom structure of HIV-1 CA-SP1 from immature HIV-1 particles
Method: subtomogram averaging / : Schur FKM, Obr M, Hagen WJH, Wan W, Arjen JJ, Kirkpatrick JM, Sachse C, Kraeusslich HG, Briggs JAG

EMDB-4018:
Cryo-electron tomogram containing HIV-1 deltaMACANC virus-like particles assembled in vitro in presence of Bevirimat
Method: electron tomography / : Schur FKM, Obr M, Hagen WJH, Wan W, Arjen JJ, Kirkpatrick JM, Sachse C, Kraeusslich HG, Briggs JAG

EMDB-4019:
Cryo-electron tomogram containing HIV-1 deltaMACANC virus-like particles assembled in vitro
Method: electron tomography / : Schur FKM, Obr M, Hagen WJH, Wan W, Arjen JJ, Kirkpatrick JM, Sachse C, Kraeusslich HG, Briggs JAG

EMDB-4020:
Cryo-electron tomogram containing immature HIV-1 particles
Method: electron tomography / : Schur FKM, Obr M, Hagen WJH, Wan W, Arjen JJ, Kirkpatrick JM, Sachse C, Kraeusslich HG, Briggs JAG

EMDB-4015:
A 3.9 Angstrom structure of HIV-1 CA-SP1 assembled in presence of Bevirimat
Method: subtomogram averaging / : Schur FKM, Obr M

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more