[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 87 items for (author: klumpe & s)

EMDB-53721:
Asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53722:
Cytoplasmic ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53723:
Inner ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53724:
Nuclear ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53725:
Asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53727:
Top nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53728:
Inner ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53729:
Bottom nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53731:
Nuclear pore complex in the nuclear envelope (NE-NPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53732:
Nuclear pore complex in nucleoplasmic membranes (nNPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53739:
Asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53740:
Cytoplasmic ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53741:
Inner ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53742:
Nuclear ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53743:
Nuclear basket asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53744:
Asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53745:
Top cytoplasmic ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53746:
Inner ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53747:
Bottom cytoplasmic ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53750:
Nuclear pore complex in the nuclear envelope (NE-NPC) in D. melanogaster Nup358::VN/Nup358::VC cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53751:
Nuclear pore complex in cytoplasmic membranes (cNPC) in D. melanogaster Nup358::VN/Nup358::VC cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-19643:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19644:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19645:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19646:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19647:
Tomographic reconstruction of nuclear copia VLP clusters in D. melanogaster ovarian somatic cells
Method: electron tomography / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-19648:
Tomogram of the nuclear periphery of a follicle cell from lift-out experiments on D. melanogaster egg chambers
Method: electron tomography / : Klumpe S, Beck F, Beck M, Plitzko JM

EMDB-19649:
In situ copia VLP cluster subtomogram averaging, C1-C1 contact map
Method: subtomogram averaging / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-19650:
In situ copia VLP cluster subtomogram averaging, C1-C5 contact map
Method: subtomogram averaging / : Klumpe S, Beck F, Plitzko JM

EMDB-19651:
In situ copia VLP cluster subtomogram averaging, C5-C5 contact map
Method: subtomogram averaging / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-19708:
The structure of the copia retrotransposon icosahedral capsid (T=9)
Method: subtomogram averaging / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

PDB-8s41:
The structure of the copia retrotransposon icosahedral capsid (T=9)
Method: subtomogram averaging / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-17241:
C. elegans L1 80S ribosome
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17242:
C. elegans L1 larva 80S ribosome class 1
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17243:
C. elegans L1 larva 80S ribosome class 2
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17244:
C. elegans L1 larva 80S ribosome class 3
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17245:
C. elegans L1 larva 80S ribosome class 4
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17246:
C. elegans L1 larva body wall muscle tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17247:
C. elegans L1 larva ventral pharyngeal periphery tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17248:
Tomogram of the nucleus of a C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-18186:
C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-18187:
Focused refinment of 11-protofilament microtubule from C. elegans
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-16537:
Optimizing Cryo-FIB Lamellas for sub-5 Angstrom in situ Structural Biology : Subtomogram average of the Large Subunit of S.Cerevisiae 80S Ribosome
Method: subtomogram averaging / : Khavnekar S, Vrbovska V, Zaoralova M, KElley R, Beck F, Klumpe S, Kotech A, Plitzko JM, Erdmann PS

EMDB-14083:
26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng C, Joshi T, Rudack T, Sakata E, Finley D

PDB-7qo4:
26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng C, Joshi T, Rudack T, Sakata E, Finley D

EMDB-14082:
Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)
Method: single particle / : Hung KYS, Klumpe S

PDB-7qo3:
Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

EMDB-14084:
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

EMDB-14085:
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

PDB-7qo5:
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more