[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: klaholz & bp)

EMDB-44552:
Septin Hexameric Complex SEPT2/SEPT6/SEPT7 of Ciona intestinalis by Cryo-EM
Method: single particle / : Mendonca DC, Pereira HM, Garratt RC

EMDB-44555:
Septin Tetrameric Complex SEPT7/SEPT9 of Ciona intestinalis by Cryo-EM
Method: single particle / : Mendonca DC, Pereira HM, Garratt RC

EMDB-18539:
Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
Method: single particle / : Holvec S, Barchet C, Frechin L, Hazemann I, von Loeffelholz O, Klaholz BP

EMDB-18812:
The structure of the human 80S ribosome at 1.9 angstrom resolution reveals the molecular role of chemical modifications and ions in RNA - Focused refinement of the of the 60S subunit
Method: single particle / : Holvec S, Barchet C, Frechin L, Hazemann I, von Loeffelholz O, Klaholz BP

EMDB-18813:
The structure of the human 80S ribosome at 1.9 angstrom resolution reveals the molecular role of chemical modifications and ions in RNA - Focused refinement of the of the 40S subunit body
Method: single particle / : Holvec S, Barchet C, Frechin L, Hazemann I, von Loeffelholz O, Klaholz BP

EMDB-18814:
The structure of the human 80S ribosome at 1.9 angstrom resolution reveals the molecular role of chemical modifications and ions in RNA - Focused refinement of the of the 40S subunit head
Method: single particle / : Holvec S, Barchet C, Frechin L, Hazemann I, von Loeffelholz O, Klaholz BP

EMDB-18815:
Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA - Global human 80S ribosome refinement before focused refinements.
Method: single particle / : Holvec S, Barchet C, Frechin L, Hazemann I, von Loeffelholz O, Klaholz BP

EMDB-15143:
H1-bound palindromic nucleosome, state 4
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15144:
H1-bound palindromic nucleosome, state 3
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15146:
H1-bound palindromic nucleosome, state 2
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15147:
H1-bound palindromic nucleosome, state 5
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15156:
H1-bound palindromic nucleosome, state 6
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15168:
H1-free palindromic nucleosome, state A
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15169:
H1-free palindromic nucleosome, state B
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Mohideen-Abdul K, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15170:
H1-free palindromic nucleosome, state C
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15171:
H1-free palindromic nucleosome, state D
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15172:
H1-free palindromic nucleosome, state E
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15173:
H1-free palindromic nucleosome, state F
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15232:
H1-bound palindromic nucleosome, state 1
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-13976:
Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (stigmatellin and azide bound)
Method: single particle / : Kao WC, Hunte C

EMDB-13977:
Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (as isolated)
Method: single particle / : Kao WC, Hunte C

EMDB-10668:
Structure of human ribosome in classical-PRE state
Method: single particle / : Bhaskar V, Schenk AD

EMDB-10674:
Cryo-EM map of human ribosome in POST state
Method: single particle / : Bhaskar V, Schenk AD

EMDB-10690:
Cryo-EM map of human ribosome in hybrid-PRE state
Method: single particle / : Bhaskar V, Schenk AD

EMDB-4260:
Volta phase plate data collection facilitates image processing and cryo-EM structure determination
Method: single particle / : von Loeffelholz O, Klaholz BP, Natchiar SK

EMDB-4261:
Volta phase plate data collection facilitates image processing and cryo-EM structure determination
Method: single particle / : von Loeffelholz O, Klaholz BP, Natchiar SK

EMDB-4262:
Volta phase plate data collection facilitates image processing and cryo-EM structure determination
Method: single particle / : von Loeffelholz O, Klaholz BP, Natchiar SK

EMDB-3883:
High-resolution cryo-EM structure of the human 80S ribosome - (composite structure)
Method: single particle / : Natchiar SK, Myasnikov AG, Kratzat H, Hazemann I, Klaholz BP

EMDB-4243:
High-resolution cryo-EM structure of the human 80S ribosome
Method: single particle / : Natchiar SK, Myasnikov AG

EMDB-4244:
High-resolution cryo-EM structure of the human 80S ribosome
Method: single particle / : Natchiar SK, Myasnikov AG

EMDB-4245:
High-resolution cryo-EM structure of the human 80S ribosome
Method: single particle / : Natchiar SK, Myasnikov AG

EMDB-4263:
High-resolution cryo-EM structure of the human 80S ribosome
Method: single particle / : Natchiar SK, Myasnikov AG

EMDB-4070:
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Method: single particle / : Myasnikov AG, Natchiar SK, Nebout M, Hazemann I, Imbert V, Khatter H, Peyron JF, Klaholz BP

EMDB-8149:
Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-INconformation
Method: single particle / : COUREUX PD, SCHMITT E

EMDB-8148:
Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation
Method: single particle / : COUREUX PD, SCHMITT E

EMDB-4049:
Ribosomal 18S rRNA base pairs with mRNA during eukaryotic translation initiation
Method: single particle / : Martin F, Menetret JF, Simonetti A, Myasniko AG, Vicens Q, Prongidi-Fix L, Natchiar SK, Klaholz BP, Eriani G

EMDB-3246:
Electron cryo-microscopy of Grapevine Fanleaf Virus complex with Nanobody
Method: single particle / : Hemmer C, Orlov I, Ackerer L, Marmonier A, Hleibieh K, Schmitt-Keichinger C, Vigne E, Gersch S, Komar V, Belval L, Berthold F, Monsion B, Bron P, Lemaire O, Lorber B, Sgro JY, Gutierrez C, Muyldermans S, Demangeat G, Klaholz BP, Ritzenthaler C

EMDB-2938:
Structure of the human 80S ribosome
Method: single particle / : Khatter H, Myasnikov GA, Natchiar SK, Klaholz BP

EMDB-2790:
The molecular structure of the left-handed supra- molecular helix of eukaryotic polyribosomes
Method: subtomogram averaging / : Myasnikov AG, Afonina ZHA, Menetret JF, Shirokov VA, Spirin AS, Klaholz BP

EMDB-2448:
Cryo-EM structure of T. thermophilus 30S Translation Initiation complex
Method: single particle / : Simonetti A, Marzi S, Billas IML, Tsai A, Fabbretti A, Myasnikov A, Roblin P, Vaiana AC, Hazemann I, Eiler D, Steitz TA, Puglisi JD, Gualerzi GO, Klaholz BP

EMDB-2631:
The Cryo-EM structure of the palindromic DNA-bound USP/EcR nuclear receptor reveals an asymmetric organization with allosteric domain positioning
Method: single particle / : Maletta M, Orlov I, Moras D, Billas IML, Klaholz BP

EMDB-2647:
electron cryo-microscopy of 1358 Lactococcus phage mature empty capsid
Method: single particle / : Spinelli S, Bebeacua C, Orlov I, Tremblay D, Klaholz B, Moineau S, Cambillau C

EMDB-1985:
Structure of the full human RXR-VDR nuclear receptor heterodimer complex with its DR3 target DNA
Method: single particle / : Orlov I, Rochel N, Moras D, Klaholz BP

EMDB-1523:
Cryo-EM structure of prokaryotic 30S Translation Initiation Complex.
Method: single particle / : Simonetti A, Marzi S, Myasnikov AG, Fabbretti A, Yusupov M, Gualerzi CO, Klaholz BP

EMDB-1391:
Structured mRNAs regulate translation initiation by binding to the platform of the ribosome.
Method: single particle / : Marzi S

EMDB-1172:
Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.
Method: single particle / : Myasnikov AG, Marzi S, Simonetti A, Giuliodori AM, Gualerzi CO, Yusupova G, Yusupov M, Klaholz BP

EMDB-1173:
Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.
Method: single particle / : Myasnikov AG, Marzi S, Simonetti A, Giuliodori AM, Gualerzi CO, Yusupova G, Yusupov M, Klaholz BP

EMDB-1064:
Visualization of release factor 3 on the ribosome during termination of protein synthesis.
Method: single particle / : Klaholz BP

EMDB-1065:
Visualization of release factor 3 on the ribosome during termination of protein synthesis.
Method: single particle / : Klaholz BP

EMDB-1005:
Structure of the Escherichia coli ribosomal termination complex with release factor 2.
Method: single particle / : Klaholz BP, Pape T, Zavialov AV, Myasnikov AG, Orlova EV, Vestergaard B, Ehrenberg M, van Heel M

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more