[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 832 items for (author: khan & y)

EMDB-72125:
Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-72280:
Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-74405:
Cryo-EM structure of MgtA with bound AMPPCP and magnesium
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9q1e:
Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9q6o:
Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9zlk:
Cryo-EM structure of MgtA with bound AMPPCP and magnesium
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-70806:
The partially ruptured LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

PDB-9osg:
The partially ruptured LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

EMDB-70805:
The intact LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

EMDB-70807:
The intact LBD state of GluK2/K5 with alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)
Method: single particle / : Khanra NK, Meyerson JR

PDB-9osf:
The intact LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

PDB-9osi:
The intact LBD state of GluK2/K5 with alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)
Method: single particle / : Khanra NK, Meyerson JR

EMDB-76895:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76896:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76898:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76899:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76900:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76901:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-48534:
Cryo-EM of MgtA in the E2-P state with bound Mg2+ at 3.1 angstrom resolution
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9mqm:
Cryo-EM of MgtA in the E2-P state with bound Mg2+ at 3.1 angstrom resolution
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-49450:
Cryo-EM structure of an MgtA tetramer in E2-P and E1-like states
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9nhz:
Cryo-EM structure of an MgtA tetramer in E2-P and E1-like states
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-56971:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

PDB-28yj:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

EMDB-70169:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70171:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3C-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70172:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-HA-BCCP Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-74113:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-74114:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zen:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zeo:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-48638:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

PDB-9mun:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

EMDB-48699:
Consensus reconstitution of SLC33A1 in complex with a Fv clasp
Method: single particle / : Gad M, Hite RK

EMDB-48855:
Cryo-EM structure of the magnesium transporter MgtA in E1-like and E2-P conformations at 2.59 angstroms
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-48923:
Cryo-EM structure of the magnesium transporter MgtA in the E2 conformation with bound beryllium fluoride (BeF3-) and Mg2+ at 2.65 A resolution.
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9n3v:
Cryo-EM structure of the magnesium transporter MgtA in E1-like and E2-P conformations at 2.59 angstroms
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9n5j:
Cryo-EM structure of the magnesium transporter MgtA in the E2 conformation with bound beryllium fluoride (BeF3-) and Mg2+ at 2.65 A resolution.
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-48602:
Cryo-EM Structure of the Magnesium Transporter MgtA in the E2 Conformation Bound to Mg2+
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9mt7:
Cryo-EM Structure of the Magnesium Transporter MgtA in the E2 Conformation Bound to Mg2+
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-48191:
Cryo-EM structure of the magnesium transporter MgtA in an E1-like conformation with bound Mg2+ ions
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

PDB-9me9:
Cryo-EM structure of the magnesium transporter MgtA in an E1-like conformation with bound Mg2+ ions
Method: single particle / : Khan MB, Primeau JO, Basu PC, Morth JP, Lemieux MJ, Young HS

EMDB-67283:
C1 Symmetry of DNA tesseract
Method: single particle / : Shiu SCC

EMDB-67284:
Octahedral Symmetry of DNA Tesseract
Method: single particle / : Shiu SCC

EMDB-73631:
The Kaggle CryoET Object Identification Challenge: ground truth 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73633:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73634:
The Kaggle CryoET Object Identification Challenge: ground truth apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73635:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73636:
The Kaggle CryoET Object Identification Challenge: ground truth virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73637:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more