[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 73 items for (author: khalid & s)

EMDB-54169:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54170:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54171:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54173:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54175:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpr:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rps:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpt:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpw:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rqi:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-8qv5:
Structure of human SPNS2 in LMNG
Method: single particle / : Li HZ, Pike ACW, McKinley G, Mukhopadhyay SMM, Moreau C, Scacioc A, Abrusci P, Borkowska O, Chalk R, Stefanic S, Burgess-Brown N, Duerr KL, Sauer DB

PDB-8qv6:
Structure of human SPNS2 in DDM
Method: single particle / : Li HZ, Pike ACW, McKinley G, Mukhopadhyay SMM, Moreau C, Scacioc A, Abrusci P, Borkowska O, Chalk R, Stefanic S, Burgess-Brown N, Duerr KL, Sauer DB

EMDB-46867:
The ternary complex of DDB1, DDA1, DET1
Method: single particle / : Schubert AF, Kschonsak M, Harris SF

PDB-9dhd:
The ternary complex of DDB1, DDA1, DET1
Method: single particle / : Schubert AF, Kschonsak M, Harris SF

EMDB-17256:
Cryo-EM structure of ATP8B1-CDC50A in E1-ATP conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17257:
Cryo-EM structure of ATP8B1-CDC50A in E1P-ADP conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17258:
Cryo-EM structure of ATP8B1-CDC50A in E1P conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17259:
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited "closed" conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17260:
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited "open" conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17261:
Cryo-EM structure of ATP8B1-CDC50A in E2P active conformation with bound PC
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17262:
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PS
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17263:
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PC
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-17264:
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PI
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8ox4:
Cryo-EM structure of ATP8B1-CDC50A in E1-ATP conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8ox5:
Cryo-EM structure of ATP8B1-CDC50A in E1P-ADP conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8ox6:
Cryo-EM structure of ATP8B1-CDC50A in E1P conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8ox7:
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited "closed" conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8ox8:
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited "open" conformation
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8ox9:
Cryo-EM structure of ATP8B1-CDC50A in E2P active conformation with bound PC
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8oxa:
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PS
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8oxb:
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PC
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

PDB-8oxc:
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PI
Method: single particle / : Dieudonne T, Kummerer F, Juknaviciute Laursen M, Stock C, Kock Flygaard R, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P

EMDB-16328:
Outer membrane attachment porin OmpM1 from Veillonella parvula
Method: single particle / : Silale A, van den Berg B

EMDB-16332:
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
Method: single particle / : Silale A, van den Berg B

EMDB-16333:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Method: single particle / : Silale A, van den Berg B

PDB-8bym:
Outer membrane attachment porin OmpM1 from Veillonella parvula
Method: single particle / : Silale A, van den Berg B

PDB-8bys:
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
Method: single particle / : Silale A, van den Berg B

PDB-8byt:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Method: single particle / : Silale A, van den Berg B

EMDB-28787:
Apo KIF20A[1-565] class-2 in complex with a microtubule
Method: helical / : Benoit MPMH, Asenjo AB, Crozet V, Ranaivoson FM, Houdusse A, Sosa H

EMDB-28789:
Apo KIF20A[1-565] class-1 in complex with a microtubule
Method: helical / : Benoit MPMH, Asenjo AB, Crozet V, Ranaivoson FM, Houdusse A, Sosa H

PDB-8f18:
Apo KIF20A[1-565] class-2 in complex with a microtubule
Method: helical / : Benoit MPMH, Asenjo AB, Crozet V, Ranaivoson FM, Houdusse A, Sosa H

PDB-8f1a:
Apo KIF20A[1-565] class-1 in complex with a microtubule
Method: helical / : Benoit MPMH, Asenjo AB, Crozet V, Ranaivoson FM, Houdusse A, Sosa H

EMDB-26767:
The 2.19-angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Complex minus stalk
Method: single particle / : Grinter R, Venugopal H, Kropp A, Greening C

EMDB-26801:
The 1.67 Angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Method: single particle / : Grinter R, Venugopal H, Kropp A, Greening C

EMDB-26802:
The CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Full complex focused refinement of stalk
Method: single particle / : Grinter R, Venugopal H, Kropp A, Greening C

EMDB-27661:
The 1.52 angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Method: single particle / : Grinter R, Venugopal H, Kropp A, Greening C

PDB-7utd:
The 2.19-angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Complex minus stalk
Method: single particle / : Grinter R, Venugopal H, Kropp A, Greening C

PDB-7uur:
The 1.67 Angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Method: single particle / : Grinter R, Venugopal H, Kropp A, Greening C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more