[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,126 items for (author: ke & al)

EMDB-51105:
Dissociated FMDV SAT2 Pentamer in complex with ultralong Fab117
Method: single particle / : Clarke JD, Duyvesteyn HME, Ren J, Fry EE, Owens RJ, Stuart DI, Hammond JA

EMDB-51139:
human 80S ribosome bound by a SKI2-exosome complex (60S signal subtracted)
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-23603:
The Cryo-EM structure of a complex between GAD65 and b96.11 Fab
Method: single particle / : Reboul CF, Le SN

EMDB-51132:
human 80S ribosome bound by a SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8m:
human 80S ribosome bound by a SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-43109:
Asymmetric unit of bacteriophage PhiM1 mature capsid
Method: single particle / : Eruera A, Hodgkinson-Bean J

EMDB-43110:
C4 pre-infection ejectosome of the mature bacteriophage PhiM1 particle
Method: single particle / : Hodgkinson-Bean J, Eruera A

EMDB-43111:
Pectobacterium phage PhiM1 ejectosome C8 map
Method: single particle / : Eruera A, Hodgkinson-Bean J

EMDB-43112:
C12 portal and adaptor complex of the mature bacteriophage PhiM1 particle
Method: single particle / : Hodgkinson-Bean J, Eruera A

EMDB-43127:
C6 nozzle and fibre complex of the mature bacteriophage PhiM1 particle
Method: single particle / : Hodgkinson-Bean J, Eruera A

EMDB-43132:
Asymmetric composite map of Pectobacterium phage PhiM1
Method: single particle / : Eruera A, Hodgkinson-Bean J

EMDB-43135:
Pectobacterium phage PhiM1 D12 capsid dimer map
Method: single particle / : Eruera A, Hodgkinson-Bean J

EMDB-46790:
Asymmetric reconstruction of the PhiM1 tail and ejectosome complexes.
Method: single particle / : Hodgkinson-Bean J, Eruera A

PDB-8vb0:
Asymmetric unit of bacteriophage PhiM1 mature capsid
Method: single particle / : Eruera A, Hodgkinson-Bean J

PDB-8vb2:
C4 pre-infection ejectosome of the mature bacteriophage PhiM1 particle
Method: single particle / : Hodgkinson-Bean J, Eruera A

PDB-8vb4:
C12 portal and adaptor complex of the mature bacteriophage PhiM1 particle
Method: single particle / : Hodgkinson-Bean J, Eruera A

PDB-8vbx:
C6 nozzle and fibre complex of the mature bacteriophage PhiM1 particle
Method: single particle / : Hodgkinson-Bean J, Eruera A

EMDB-51133:
80S-bound human Ski2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51134:
human 40S ribosome bound by a SKI238-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51135:
40S-bound human SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51136:
40S-bound human SKI238 complex in the open state (Gatekeeping module)
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-51137:
human SKI7-SKI238 complex in the open state
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8n:
80S-bound human Ski2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8o:
human 40S ribosome bound by a SKI238-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8p:
40S-bound human SKI2-exosome complex
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8q:
40S-bound human SKI238 complex in the open state (Gatekeeping module)
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

PDB-9g8r:
human SKI7-SKI238 complex in the open state
Method: single particle / : Koegel A, Keidel A, Loukeri MJ, Kuhn CC, Langer LM, Schaefer IB, Conti E

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9asd:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9au2:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-18968:
Cryo-EM structure of a coxsackievirus A6 virus-like particle
Method: single particle / : Giannopoulou EA, Jakobi AJ

EMDB-42775:
Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)
Method: single particle / : Hayes BK, Venugopal H, McGowan S

EMDB-42792:
Acinetobacter baumannii Tse15 Rhs effector
Method: single particle / : Hayes BK, Venugopal H, McGowan S

PDB-8uxt:
Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)
Method: single particle / : Hayes BK, Venugopal H, McGowan S

PDB-8uy4:
Acinetobacter baumannii Tse15 Rhs effector
Method: single particle / : Hayes BK, Venugopal H, McGowan S

EMDB-19653:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-19654:
Human RNF213 (consensus refinement without accounting for flexibility)
Method: single particle / : Naydenova K, Randow F

EMDB-19655:
Human RNF213: focused refinement of ATPase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19656:
Human RNF213: focused refinement of stalk domain
Method: single particle / : Naydenova K, Randow F

EMDB-19657:
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
Method: single particle / : Naydenova K, Randow F

EMDB-19658:
Human RNF213: focused refinement of E3 ligase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19659:
Human RNF213: focused refinement of E3-RING domain
Method: single particle / : Naydenova K, Randow F

PDB-8s24:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-51423:
Tomogram of pyrenoid of T. pseudonana Shell4 knock-out
Method: electron tomography / : Demulder M, Engel B

EMDB-51424:
Tomogram of pyrenoid of T. pseudonana Shell4 knock-out
Method: electron tomography / : Demulder M, Engel B

EMDB-51425:
Tomogram of pyrenoid of T. pseudonana Shell4 knock-out
Method: electron tomography / : Demulder M, Engel B

EMDB-51427:
Tomogram of pyrenoid of T. pseudonana
Method: electron tomography / : Demulder M, Engel B

EMDB-37751:
Cryo-EM structure of T. pseudonana PyShell helical tube
Method: helical / : Kawamoto A, Tohda R, Gerle C, Kurisu G

PDB-8wqp:
Cryo-EM structure of T. pseudonana PyShell helical tube
Method: helical / : Kawamoto A, Tohda R, Gerle C, Kurisu G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more