[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,048 items for (author: kar & d)

EMDB-54430:
Lectin/toxin 2 from Coprinopsis cinerea
Method: single particle / : Cordara G, Ali Ahmad A, Krengel U

EMDB-47752:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-47805:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e93:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e9v:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-52409:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52410:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides SA, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52411:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-53509:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hue:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9huf:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hug:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9r1h:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-56420:
Structure of the MAP2K MEK1 without bound nucleotide in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

PDB-9tyi:
Structure of the MAP2K MEK1 without bound nucleotide in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

EMDB-49185:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST4
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49186:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST6 and monoclonal fab 045-09 2B05
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49187:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST10
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49188:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST13
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49189:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST14
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49190:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST15
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49191:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST17
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49192:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST18
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-55720:
Cryo-EM reconstruction for n-Tr20U.
Method: single particle / : Mehta R, Glatt S

EMDB-55721:
Cryo-EM structure of nTr20 tRNA
Method: single particle / : Mehta R, Glatt S

EMDB-53343:
Cryo-EM structure of aquaporin 3 at pH 8.0
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-53344:
Cryo-EM structure of aquaporin 3 at pH 5.5
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-53345:
Cryo-EM structure of aquaporin 3 at pH 8.0 with hydrogen peroxide
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsx:
Cryo-EM structure of aquaporin 3 at pH 8.0
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsy:
Cryo-EM structure of aquaporin 3 at pH 5.5
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsz:
Cryo-EM structure of aquaporin 3 at pH 8.0 with hydrogen peroxide
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-49097:
H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST15
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49098:
H1 hemagglutinin (A/California/04/2009) with E47K mutation in HA2 in complex with central stem-targeting Fab ST10
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49099:
H5 hemagglutinin (A/Jiangsu/NJ210/2023) in complex with central stem-targeting Fab ST14
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49100:
H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST4
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-56418:
Structure of the MAP2K MEK1 in an inactive conformation in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

EMDB-56419:
Structure of the MAP2K MEK1 in an active conformation in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

PDB-9tyg:
Structure of the MAP2K MEK1 in an inactive conformation in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

PDB-9tyh:
Structure of the MAP2K MEK1 in an active conformation in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

EMDB-51820:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

EMDB-51899:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52095:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52299:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9h3g:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more