[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,297 items for (author: kar & d)

EMDB-56664:
Cryo-ET of IAV (WSN-M1-Udorn) supernatant
Method: electron tomography / : Peterl S, Chlanda P

EMDB-56667:
Cryo-ET of IAV (WSN-M1-Udorn) pellet
Method: electron tomography / : Peterl S, Chlanda P

EMDB-56668:
Cryo-ET of IAV (WSN-M1-Udorn) unfractionated
Method: electron tomography / : Peterl S, Chlanda P

EMDB-53313:
Structure of the MEGF8-MOSMO complex with nanobody 270 (Focused refinement)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53323:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53327:
Structure of the helix-stabilized MMM ubiquitin ligase complex with nanobody 270 (Consensus map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53328:
Focused refinement of the MGRN1 ubiquitin ligase in complex with helix-stabilized MEGF8, MOSMO and nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53329:
Cryo-EM structure of the helix-stabilized MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse S, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53336:
Focused refinement of the MEGF8-MOSMO complex with nanobody 992
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53337:
Focused refinement of the MEGF8 and MOSMO extracellular domains with nanobody 992
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53338:
Focused refinement of the MGRN1 ubiquitin ligase in complex with MEGF8, MOSMO and nanobody 992
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53339:
Structure of the MMM ubiquitin ligase complex with nanobody 992 (Consensus map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53340:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 992 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Sarkar P, Latorraca NR, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53367:
Cryo-EM structure of the binary MEGF8-MOSMO complex with nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-57249:
Focused refinement of the helix-stabilized MEGF8-MOSMO complex with nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qqs:
Structure of the MEGF8-MOSMO complex with nanobody 270 (Focused refinement)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qru:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qs6:
Cryo-EM structure of the helix-stabilized MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse S, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qsh:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 992 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qty:
Cryo-EM structure of the binary MEGF8-MOSMO complex with nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-76979:
Cryo-ET of mitochondrial membrane in direct interaction with alpha-synuclein exhibiting membrane morphological distortion
Method: electron tomography / : Jaber N, Dai W

EMDB-76980:
Supplemental: irregularly shaped mitochondria interacting with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-76981:
Supplemental: alpha-synuclein oligomers on the surface of a mitochondrial membrane
Method: electron tomography / : Jaber N, Dai W

EMDB-76983:
Supplemental: mitochondria not associated with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-52524:
Ku70/80 bound to WRN-exo
Method: single particle / : Hardwick SW, Zahid S, Chaplin AK, Ropars R, Charbonnier JB

PDB-9hzg:
Ku70/80 bound to WRN-exo
Method: single particle / : Hardwick SW, Zahid S, Chaplin AK, Ropars R, Charbonnier JB

EMDB-55652:
Composite map of LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55653:
Consensus map of LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55654:
Focused map of LRRC58-CDO1 region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55655:
Focused map of CUL2-LRRC58-EloC interface region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55656:
Focused map of ARIH1-Ub region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55658:
Structure of LRRC58-EloB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55659:
Consensus Map of LRRC58-ELOB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55660:
Focused map of LRRC58-CDO1 region from LRRC58-ELOB/C-CDO1-CUL5-RBX2-NEDD8-ARIH2-UB
Method: single particle / : Stier L, Andree GA, Schulman BA

PDB-9t7v:
Structure of LRRC58-EloB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-75296:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 1
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

EMDB-75297:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 2
Method: single particle / : Guo Y, Shukla S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

EMDB-75298:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 3
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-75299:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 4
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

PDB-10my:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 1
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10mz:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 2
Method: single particle / : Guo Y, Shukla S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10na:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 3
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10nb:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 4
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-47276:
Human GATOR2 complex - apo state
Method: single particle / : Wranik M, Rogala KB

EMDB-47277:
Human GATOR2 complex - Sestrin2 bound state
Method: single particle / : Wranik M, Rogala KB

EMDB-47278:
Human GATOR2 complex - CASTOR1 bound state
Method: single particle / : Wranik M, Rogala KB

PDB-9dx0:
Human GATOR2 complex - apo state
Method: single particle / : Wranik M, Rogala KB

PDB-9dx1:
Human GATOR2 complex - Sestrin2 bound state
Method: single particle / : Wranik M, Rogala KB

PDB-9dx2:
Human GATOR2 complex - CASTOR1 bound state
Method: single particle / : Wranik M, Rogala KB

EMDB-56070:
E. coli 70S ribosome with A- and P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more