[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,039 items for (author: kan & z)

EMDB-66629:
Human GPR30 -Gq complex consensus map
Method: single particle / : Kaneda S, Akasaka H, Oshima HS, Shihoya S, Nureki O

EMDB-66630:
Human GPR30 -Gq complex G-protein focused
Method: single particle / : Kaneda S, Akasaka H, Oshima HS, Shihoya S, Nureki O

EMDB-66631:
Human GPR30 -Gq complex receptor focused
Method: single particle / : Kaneda S, Akasaka H, Oshima HS, Shihoya S, Nureki O

EMDB-66632:
Human GPR30 -Gq complex
Method: single particle / : Kaneda S, Oshima HS, Akasaka H, Shihoya W, Nureki O

PDB-9x74:
Human GPR30 -Gq complex
Method: single particle / : Kaneda S, Oshima HS, Akasaka H, Shihoya W, Nureki O

EMDB-81330:
Dictyostelium discoideum cytoplasmic dynein motor domain in complex with ADP.Vi (Phi-particle)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81335:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81336:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81337:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (Apo state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81338:
Dictyostelium discoideum cytoplasmic dynein motor domain in the absence of nucleotide (Apo state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27pt:
Dictyostelium discoideum cytoplasmic dynein motor domain in complex with ADP.Vi (Phi-particle)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27py:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27pz:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27qa:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (Apo state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27qb:
Dictyostelium discoideum cytoplasmic dynein motor domain in the absence of nucleotide (Apo state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-72204:
Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
Method: single particle / : Travin DY, Basu RS, Paranjpe M, Klepacki D, Zhurakovskaya AI, Vazquez-Laslop N, Mankin AS, Polikanov YS, Gagnon MG

EMDB-72205:
Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
Method: single particle / : Travin DY, Basu RS, Paranjpe M, Klepacki D, Zhurakovskaya AI, Vazquez-Laslop N, Mankin AS, Polikanov YS, Gagnon MG

PDB-9q3q:
Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
Method: single particle / : Travin DY, Basu RS, Paranjpe M, Klepacki D, Zhurakovskaya AI, Vazquez-Laslop N, Mankin AS, Polikanov YS, Gagnon MG

PDB-9q3r:
Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
Method: single particle / : Travin DY, Basu RS, Paranjpe M, Klepacki D, Zhurakovskaya AI, Vazquez-Laslop N, Mankin AS, Polikanov YS, Gagnon MG

EMDB-80088:
receptor-arrestin
Method: single particle / : Fei X, Zhibin Z

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-76216:
Structure of AGO2 RISC with a 16-nt target
Method: single particle / : Zhang H, Nakanishi K

PDB-11zj:
Structure of AGO2 RISC with an 18-nt target
Method: single particle / : Zhang H, Nakanishi K

EMDB-68387:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

PDB-22jw:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

EMDB-72968:
6.9 A map of 3 x FBXO42-SKP1 bound to CCDC6-PP2Ac
Method: single particle / : Michaelian N, Azumaya CM, Hsu PL

EMDB-66225:
Amyloid-beta 40 Flemish (A21G) mutant Filaments from Human Brain
Method: helical / : Guillen-Poza PA, Yang Y, Hervas R

PDB-9wtw:
Amyloid-beta 40 Flemish (A21G) mutant Filaments from Human Brain
Method: helical / : Guillen-Poza PA, Yang Y, Hervas R

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

PDB-31mr:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-64749:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64751:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64752:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64761:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64777:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-65890:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80132:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK, Mishra S, Dalal A, Nureki O

PDB-25if:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK

PDB-9v35:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v38:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3c:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3y:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v4d:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9wdi:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-66911:
Structure of dodecameric Apo TpkB from Thermus thermophilus
Method: single particle / : Torri M, Kanno R, Mizoguchi A, Humbel B, Tani K, Masui R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more