[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 60 items for (author: jr & jb)

EMDB-47084:
Cryo-EM structure of LptB2FG apo-1
Method: single particle / : Su C

EMDB-47085:
Cryo-EM structure of LptB2FG apo-II
Method: single particle / : Su CC

EMDB-47086:
Cryo-EM structure of LptB2FG apo-III
Method: single particle / : Su CC

EMDB-47088:
Cryo-EM structure of LptB2FGC apo-I
Method: single particle / : Su CC

EMDB-47089:
Cryo-EM structure of LptB2FGC apo-II
Method: single particle / : Su CC

EMDB-47480:
Torpedo muscle-type nicotinic acetylcholine receptor - Diliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

EMDB-47481:
Torpedo muscle-type nicotinic acetylcholine receptor - Unliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

EMDB-47482:
Torpedo muscle-type nicotinic acetylcholine receptor - Monoliganded State
Method: single particle / : Thompson MJ, Nury H, Zarkadas E, Baenziger JE

EMDB-51699:
Cryo-EM structure of the capsid-forming phage-inducible chromosomal island (cf-PICI) EcCI2
Method: single particle / : Patkowski JB, Penades JR, Costa TRD

EMDB-48323:
Structure of the IFIT2-IFIT3 heterodimer from Mus musculus
Method: single particle / : Glasner DR, Todd C, Cook BD, DUrso A, Khosla S, Estrada E, Wagner J, Bartels MD, Ford P, Prych J, Hatch K, Yee BA, Ego KM, Liang Q, Holland SR, Case JB, Corbett KD, Diamond MS, Yeo GW, Herzik Jr MA, Van Nostrand EL, Daugherty MD

EMDB-42489:
Bacillus niacini flavin monooxygenase
Method: single particle / : Richardson BC, French JB

EMDB-42490:
Bacillus niacini flavin monooxygenase with bound (2,6)DHP
Method: single particle / : Richardson BC, French JB

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199
Method: single particle / : Binshtein E, Crowe JE

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

EMDB-41667:
Cryo-EM structure of the PP2A:B55-FAM122A complex, B55 body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-41668:
Cryo-EM structure of the PP2A:B55-FAM122A complex, PP2Ac body
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-40644:
Cryo-EM structure of the PP2A:B55-FAM122A complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-41604:
Cryo-EM structure of the PP2A:B55-ARPP19 complex
Method: single particle / : Fuller JR, Padi SKR, Peti W, Page R

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28041:
Cryo-EM Structure of human ABCA7 in BPL/Ch Nanodiscs
Method: single particle / : Alam A, Le LTM, Thompson JR

EMDB-28044:
Human ABCA7 in BPL/Ch nanodiscs (Map 2)
Method: single particle / : Alam A, Le LTM, Thompson JR

EMDB-28047:
Cryo-EM Structure of human ABCA7 in PE/Ch nanodiscs
Method: single particle / : Alam A, Le LTM, Thompson JR

EMDB-28050:
Cryo-EM structure of human ABCA7 in Digitonin
Method: single particle / : Alam A, Le LTM, Thompson JR

EMDB-28451:
Cryo-EM Structure of Nanodisc reconstituted human ABCA7 EQ mutant in ATP bound closed state
Method: single particle / : Alam A, Le LTM, Thompson JR

EMDB-25062:
In-situ structure of SIV trimer
Method: subtomogram averaging / : Gorman J, Wang CY, Mason RD, Nazzari AF, Welles H, Zhou TQ, Jr JB, Tsybovsky Y, Verardi R, Yang YP, Zhang BS, Lifson JD, Liu J, Roederer M, Kwong PD

EMDB-26507:
SARS-CoV-2 spike in complex with Multivalent miniprotein inhibitor FUS231-P24 (2RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26508:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS231-P24 (3RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26509:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS31-G10 (2RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26510:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS31-G10 (3RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26511:
SARS-CoV-2 spike in complex with AHB2-2GS-SB175 (local refinement of the RBD and AHB2)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26512:
SARS-CoV-2 spike in complex with AHB2-2GS-SB175
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-13857:
Beta049 fab in complex with SARS-CoV2 beta-Spike glycoprotein, The Beta mAb response underscores the antigenic distance to other SARS-CoV-2 variants
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13868:
Beta-50 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13869:
COVOX-222 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13870:
Beta-43 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13871:
Beta-26 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13872:
Beta-32 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13873:
Beta-53 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13874:
Beta-44 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-13875:
Beta-06 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-23719:
EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs
Method: single particle / : Murin CD, Ward AB

EMDB-24663:
Cryo-EM density map of the outer dynein arm core from bovine tracheal cilia
Method: single particle / : Gui M, Anderson JR, Botsch JJ, Meleppattu S, Singh SK, Zhang Q, Brown A

EMDB-24664:
Composite cryo-EM density map of the 48-nm repeat doublet microtubule from bovine tracheal cilia
Method: single particle / : Gui M, Anderson JR, Botsch JJ, Meleppattu S, Singh SK, Zhang Q, Brown A

EMDB-12095:
Cryo-EM structure of mitochondrial complex I from Mus musculus inhibited by IACS-2858 at 3.0 A
Method: single particle / : Chung I, Hirst J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more