[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 115 items for (author: joshi & t)

EMDB-46708:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. Complex of fAPN with FCoV-23 RBD
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46709:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S short
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46710:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S Do in proximal conformation (local refinement)
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46714:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long with Do in swung-out conformation
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46716:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long domain 0 in swung-out conformation (local refinement)
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46739:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long with Do in mixed conformations (global refinement).
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-51373:
Full-lenght Nedd4-2 E3 ubiquitin ligase
Method: single particle / : Kosek D, Janosev M, Obsil T, Obsilova V

EMDB-51374:
Full-lenght Nedd4-2 E3 ubiquitin ligase in presence of Ca2+
Method: single particle / : Kosek D, Janosev M, Obsil T, Obsilova V

PDB-9gik:
Full-lenght Nedd4-2 E3 ubiquitin ligase
Method: single particle / : Kosek D, Janosev M, Obsil T, Obsilova V

PDB-9gim:
Full-lenght Nedd4-2 E3 ubiquitin ligase in presence of Ca2+
Method: single particle / : Kosek D, Janosev M, Obsil T, Obsilova V

EMDB-50034:
SARS-CoV-2 M protein dimer (short form) in complex with Fab-B and CIM-834
Method: single particle / : Debski-Antoniak OJ, Hurdiss DL

EMDB-50035:
SARS-CoV-2 M protein dimer (long form) in complex with Fab-E and incubated with CIM-834
Method: single particle / : Debski-Antoniak O, Hurdiss DL

PDB-9exa:
SARS-CoV-2 M protein dimer (short form) in complex with Fab-B and CIM-834
Method: single particle / : Debski-Antoniak OJ, Hurdiss DL

EMDB-19011:
Human PADI4 in complex with cyclic peptide PADI4_3
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

EMDB-19012:
Human PADI4 in complex with cyclic peptide PADI4_11
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

PDB-8r8u:
Human PADI4 in complex with cyclic peptide PADI4_3
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

PDB-8r8v:
Human PADI4 in complex with cyclic peptide PADI4_11
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

EMDB-16966:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-16967:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-16968:
Small subunit of yeast mitochondrial ribosome.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17089:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (overall refinement)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17090:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on the body)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17091:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on the head)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17092:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on the tail)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17093:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on METTL17/Rsm22)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17094:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (overall refinement)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17095:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (local-masked refined on the body)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17096:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (local-masked refined on the head)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17097:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (local-masked refined on the tail)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17098:
Small subunit of yeast mitochondrial ribosome (overall refinement)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17099:
Small subunit of yeast mitochondrial ribosome (local-masked refined on the body)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17100:
Small subunit of yeast mitochondrial ribosome(local-masked refined on the head)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17101:
Small subunit of yeast mitochondrial ribosome(local-masked refined on the tail)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17102:
Small subunit of yeast mitochondrial ribosome(local-masked refined on the helix bundle)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

PDB-8om2:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

PDB-8om3:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

PDB-8om4:
Small subunit of yeast mitochondrial ribosome.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-41370:
Structure of a class A GPCR/Fab complex
Method: single particle / : Sun D, Johnson M, Masureel M

EMDB-41827:
Structure of a class A GPCR/agonist complex (focused map2)
Method: single particle / : Sun D, Johnson M, Masureel M

EMDB-41828:
Structure of a class A GPCR/agonist complex (focused map1)
Method: single particle / : Sun D, Johnson M, Masureel M

EMDB-41829:
Structure of a class A GPCR/agonist complex
Method: single particle / : Sun D, Johnson M, Masureel M

EMDB-41850:
Structure of a class A GPCR/agonist complex (Consensus map)
Method: single particle / : Sun D, Johnson M, Masureel M

PDB-8tlm:
Structure of a class A GPCR/Fab complex
Method: single particle / : Sun D, Johnson M, Masureel M

PDB-8u1u:
Structure of a class A GPCR/agonist complex
Method: single particle / : Sun D, Johnson M, Masureel M

EMDB-27779:
Structure of the SARS-CoV-2 spike glycoprotein S2 subunit
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8dya:
Structure of the SARS-CoV-2 spike glycoprotein S2 subunit
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-15604:
ATG9A and ATG2A form a heteromeric complex essential for autophagosome formation
Method: single particle / : Chiduza GN, van Vliet AR, De Tito S, Punch EK, Tooze SA

EMDB-15605:
Low resolution 3D reconstruction of ATG2A from cryo-EM
Method: single particle / : Cherepanov P, Chiduza GN, Pye VE, van Vliet AR, Tooze SA

EMDB-26727:
Structure of the human coronavirus CCoV-HuPn-2018 spike glycoprotein with domain 0 in the proximal conformation
Method: single particle / : Tortorici MA, Veesler D

EMDB-26729:
CCoV-HuPn-2018 S in the proximal conformation (local refinement of domain 0)
Method: single particle / : Tortorici MA, Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more