[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 36 items for (author: johnson & cn)

EMDB-52210:
TRPML1 in complex with compound 2
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52211:
TRPML1 in complex with compound 5
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52242:
TRPML1 in complex with compound 1a
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52243:
TRPML1 in complex with compound 3
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52245:
TRPML1 in complex with compound 4a
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52246:
TRPML1 in complex with compound 8
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52248:
TRPML1 in complex with compound 9a
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52249:
TRPML1 in complex with compound 10
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52250:
TRPML1 in complex with compound 11
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-52251:
TRPML1 in complex with compound 13
Method: single particle / : Reeks J, Mahajan P, Clark M, Cowan SR, Di Daniel E, Earl CP, Fisher S, Holvey RS, Jackson SM, Lloyd-Evans E, Morgillo CM, Mortenson PN, O'Reilly M, Richardson CJ, Schopf P, Tams DM, Waller-Evans H, Ward SE, Whibley S, Williams PA, Johnson CN

EMDB-43757:
Cas9d Effector:sgRNA Binary Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

EMDB-43760:
Cas9d 6bp R-loop Seed Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

EMDB-43878:
Cas9d 20bp R-loop Complex
Method: single particle / : Fregoso Ocampo R, Taylor DW, Bravo JPK

EMDB-45764:
CryoEM structure of the APO-BAM complex in DDM detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45765:
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45766:
CryoEM structure of the APO-BAM complex in SMA nanodisc
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45767:
Structure of BAM complexed with PTB2 ligand in detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45768:
CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-40208:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-40209:
Chlorophyll-binding region of de novo-designed nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-43508:
Structure of a bacterial gasdermin small oval pore assembly
Method: single particle / : Johnson AG, Mayer ML, Kranzusch PJ

EMDB-43509:
Structure of a bacterial gasdermin medium oval pore assembly
Method: single particle / : Johnson AG, Mayer ML, Kranzusch PJ

EMDB-43510:
Structure of a bacterial gasdermin large oval pore assembly
Method: single particle / : Johnson AG, Mayer ML, Kranzusch PJ

EMDB-43511:
Structure of a bacterial gasdermin double pore assembly
Method: single particle / : Johnson AG, Mayer ML, Kranzusch PJ

EMDB-43513:
Structure of a bacterial gasdermin slinky-like oligomer from a heterogeneous sample
Method: single particle / : Johnson AG, Mayer ML, Kranzusch PJ

EMDB-40570:
Structure of a bacterial gasdermin slinky-like oligomer
Method: single particle / : Johnson AG, Mayer ML, Kranzusch PJ

PDB-8sl0:
Structure of a bacterial gasdermin slinky-like oligomer
Method: single particle / : Johnson AG, Mayer ML, Kranzusch PJ

EMDB-15616:
Four subunit cytochrome b-c1 complex from Rhodobacter sphaeroides in native nanodiscs - consensus refinement in the b-b conformation
Method: single particle / : Swainsbury DJK, Hawkings FR, Martin EC, Musial S, Salisbury JH, Jackson PJ, Farmer DA, Johnson MP, Siebert CA, Hitchcock A, Hunter CN

EMDB-15617:
Four subunit cytochrome b-c1 complex from Rhodobacter sphaeroides in native nanodiscs - focussed refinement in the b-c conformation
Method: single particle / : Swainsbury DJK, Hawkings FR, Martin EC, Musial S, Salisbury JH, Jackson PJ, Farmer DA, Johnson MP, Siebert CA, Hitchcock A, Hunter CN

EMDB-14224:
2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP complex from Synechocystis sp. PCC 6803 with natively bound lipids and plastoquinone molecules
Method: single particle / : Farmer DF, Proctor MS, Malone LA, Swainsbury DPK, Hawkings FR, Hitchcock A, Johnson MP

EMDB-15017:
3.15 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Synechocystis sp. PCC 6803 with natively bound plastoquinone and lipid molecules.
Method: single particle / : Malone LA, Procter MS, Farmer DF, Swainsbury DJK, Hawkings FR, Pastorelli F, Emrich-Mills TZ, Siebert A, Hunter CN, Hitchcock A, Johnson MP

EMDB-4981:
3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules
Method: single particle / : Malone LA, Qian P

EMDB-7315:
Bacteriophage P22 gp26minus symmetric reconstruction
Method: single particle / : McNulty R, Johnson JE

EMDB-7316:
P22 gp26 minus asymmetric reconstruction 6-fold symmetry along Z-axis
Method: single particle / : McNulty R, Johnson JE

EMDB-7317:
P22 gp26minus asymmetric reconstruction C12 symmetry along Z-axis
Method: single particle / : McNulty R, Johnson JE

EMDB-6429:
Architecture of the complex formed by large and small Terminase subunits from Bacteriophage P22
Method: single particle / : McNulty R, Johnson JE

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more