[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 247 items for (author: jin & cy)

EMDB-61426:
The complex structure of 0086-0043 and NET determined with Cryo-EM.
Method: single particle / : Jia YJ, Gao B, Tan JX, Yan CY, Zhang W, Lan YY

EMDB-47914:
Human P2RY8 bound to S-geranylgeranyl-L-glutathione in complex with miniG13 (transmembrane domain)
Method: single particle / : Billesboelle CB, Manglik A

EMDB-47912:
Human P2RY8 bound to S-geranylgeranyl-L-glutathione in complex with miniG13
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71704:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

PDB-9pkv:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

EMDB-48537:
A8 Fab in complex with CD97
Method: single particle / : Hattori T, Bang I, Fang M, Koide S

EMDB-47927:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

EMDB-47931:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

PDB-9ecv:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

PDB-9ed2:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

EMDB-48078:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

PDB-9ei8:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-61190:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61205:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61206:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j6z:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j7k:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j7l:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-48079:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Victoria 2011 HA trimer
Method: single particle / : Gorman J, Kwong PD

PDB-9ei9:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Victoria 2011 HA trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-48707:
Clostridioides difficile Toxin A with mCDIFA-248-25 Fab
Method: single particle / : Huynh KW, Ammirati M, Kroh HK, Lacy DB, Han S

PDB-9mx1:
Clostridioides difficile Toxin A with mCDIFA-248-25 Fab
Method: single particle / : Huynh KW, Ammirati M, Kroh HK, Lacy DB, Han S

EMDB-44910:
M1A Midnolin-Proteasome (with Ubl)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44927:
M2A Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44928:
M2A Midnolin Proteasome (translocating, focused on PSMD2)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44929:
M2B Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44930:
M1B Midnolin-Proteasome
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bui:
M1A Midnolin-Proteasome (with Ubl)
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bv1:
M2A Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bv2:
M2B Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bv3:
M1B Midnolin-Proteasome
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-48846:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

PDB-9n36:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

EMDB-47035:
Cryo-EM map of full-length Tom1 (S. cerevisiae), HECT focus map
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47045:
Cryo-EM map of full-length Tom1 (S. cerevisiae), ARLD1-4 focus map
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47046:
Focus map, Cryo-EM map of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-47047:
Cryo-EM map of non-crosslinked Tom1, open conformation
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47048:
Cryo-EM map of full length S. cerevisiae Tom1, closed-ring conformation
Method: single particle / : Warner KM, Hunkeler M, Fischer ES

EMDB-47049:
Tom1 ubiquitylation cascade, closed-ring conformation
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47050:
Cryo-EM of Tom1 ubiquitylation, open conformation
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47051:
Cryo-EM of Tom1 ubiquitylation, class 3
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47052:
Cryo-EM map of Tom1 ubiquitylation, class 5
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47053:
Cryo-EM map of Tom1 ubiquitylation, class 4
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47054:
Cryo-EM map of Tom1 ubiquitylation, class 6
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47055:
Cryo EM map of Tom1 ubiquitylation, class 2
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47056:
Tom1 ubiquitylation, class 1
Method: single particle / : Warner KM, Hunkeler M, Baek K, Fischer ES

EMDB-47057:
Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

EMDB-47058:
Cryo-EM structure of Tom1 (S. cerevisiae)
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

PDB-9dns:
Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

PDB-9dnt:
Cryo-EM structure of Tom1 (S. cerevisiae)
Method: single particle / : Warner KM, Hunkeler M, Baek K, Roy Burman SS, Fischer ES

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more