[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 23,556 items for (author: ji & z)

EMDB-80113:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with imipenem
Method: single particle / : Zhu S

EMDB-80118:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with aztreonam
Method: single particle / : Zhu S

EMDB-80125:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI
Method: single particle / : Zhu S

PDB-25hr:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with imipenem
Method: single particle / : Zhu S

PDB-25hs:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with aztreonam
Method: single particle / : Zhu S

PDB-25hw:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI
Method: single particle / : Zhu S

EMDB-66925:
In situ structure of the PSI-LHCI supercomplex from Oryza sativa
Method: single particle / : Li J, Elias E, Zhang K, Croce R, Zhu J

EMDB-66932:
In situ structure of the PSI-LHCI-LHCII supercomplex from Oryza sativa
Method: single particle / : Li J, Elias E, Zhang K, Croce R, Zhu J

PDB-9xj1:
In situ structure of the PSI-LHCI supercomplex from Oryza sativa
Method: single particle / : Li J, Elias E, Zhang K, Croce R, Zhu J

PDB-9xj9:
In situ structure of the PSI-LHCI-LHCII supercomplex from Oryza sativa
Method: single particle / : Li J, Elias E, Zhang K, Croce R, Zhu J

EMDB-68387:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

PDB-22jw:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

EMDB-63507:
Cryo-EM structure of the chromatin remodeler Rad26 N-terminal deletion mutant bound to the nucleosome at SHL6
Method: single particle / : Fukushima Y, Takizawa Y, Kinoshita C, Ogasawara M, Haruhiko E, Sekine S, Kagawa W, Kurumizaka H

EMDB-72968:
6.9 A map of 3 x FBXO42-SKP1 bound to CCDC6-PP2Ac
Method: single particle / : Michaelian N, Azumaya CM, Hsu PL

EMDB-73059:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-FAT10(t)/FAT10(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

EMDB-73060:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-Ub(t)/Ub(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

EMDB-73079:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/FAT10(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

EMDB-73081:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/Ub(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

PDB-9ykv:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-FAT10(t)/FAT10(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

PDB-9ykw:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-Ub(t)/Ub(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

PDB-9ylb:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/FAT10(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

PDB-9ylf:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/Ub(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

EMDB-65978:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

PDB-9whx:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

EMDB-65979:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the post-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

PDB-9why:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the post-strand exchange state
Method: single particle / : Hiraizumi M, Tsujimoto E, Shiojiri N, Nagahata N, Yamashita K, Nishimasu H

EMDB-66758:
Plasmodium vivax Perforin-like protein 2 K735C/E771C mutant(PvPLP2 K735C/E771C) prepore on membrane by cryoET subtomogram averaging
Method: subtomogram averaging / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66759:
Plasmodium vivax Perforin-like protein 2 pore on membrane by cryoET subtomogram averaging
Method: subtomogram averaging / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66760:
Structure of Plasmodium vivax Perforin-like protein2 pore in ring form
Method: single particle / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66761:
Structure of Plasmodium vivax Perforin-like protein2 pore in acr form
Method: single particle / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-63396:
cryo-EM structure of E.coli DRT4 mutant with D240A and D241A.
Method: single particle / : Yan XH, Jin XH, Guan ZY, Zou TT

PDB-9luj:
cryo-EM structure of E.coli DRT4 mutant with D240A and D241A.
Method: single particle / : Yan XH, Jin XH, Guan ZY, Zou TT

EMDB-69516:
In-cell map of mitoribosome from T cells of middle-aged patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, San J

EMDB-69519:
Tomogram of mitochondria in T cell from middle-aged patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

EMDB-69521:
Tomogram of mitochondria in T cell from older patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

EMDB-69523:
In-cell map of mitoribosome from T cells of older patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

EMDB-69526:
In-cell map of electron transport chain supercomplex from T cells of middle-aged patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

EMDB-69528:
In-cell map of electron transport chain supercomplex from T cells of older patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

EMDB-66278:
Human TOM-TIM22 supercomplex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66279:
Human TIM22 complex wtih substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66280:
Human TOM complex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66281:
Human TOM complex with substrate Tim22-GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv1:
Human TIM22 complex wtih substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv2:
Human TOM complex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv3:
Human TOM complex with substrate Tim22-GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-73703:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73704:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73705:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73707:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex (RECC), tRNA focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-72245:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more