[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 294 items for (author: imai & y)

EMDB-70605:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

EMDB-70685:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

PDB-9om3:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

PDB-9op9:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

EMDB-70396:
S. griseus TUA bound UmbA4 complexes
Method: helical / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-9oee:
S. griseus TUA bound UmbA4 complexes
Method: helical / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-73973:
Streptomyces coelicolor UmbA4 complex
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Mougous JD, Veesler D

EMDB-61579:
Cryo-EM structure of chalcone synthase (CHS) from Physcomitrella patens in the presence of CHIL
Method: single particle / : Sato K, Yokoyama T, Tanaka Y, Imaizumi R, Yasuda A, Yanai T, Yamashita S, Waki T, Tsunashima M, Nakayama T

PDB-9jl6:
Cryo-EM structure of chalcone synthase (CHS) from Physcomitrella patens in the presence of CHIL
Method: single particle / : Sato K, Yokoyama T, Tanaka Y, Imaizumi R, Yasuda A, Yanai T, Yamashita S, Waki T, Tsunashima M, Nakayama T

EMDB-60902:
Cryo-EM structure of the type IVb pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

EMDB-60903:
Cryo-EM structure of the type I pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

PDB-9iuf:
Cryo-EM structure of the type IVb pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

PDB-9iug:
Cryo-EM structure of the type I pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

EMDB-39879:
EmrAB-TolC MFS-type tripartite multidrug efflux pump EA
Method: single particle / : Du D, Zhong Z, Tuerxunjiang M

EMDB-39885:
EmrAB-TolC MFS-type tripartite multidrug efflux pump FA
Method: single particle / : Du D, Zhong Z, Tuerxunjiang M

PDB-8zal:
EmrAB-TolC MFS-type tripartite multidrug efflux pump EA
Method: single particle / : Du D, Zhong Z, Tuerxunjiang M

PDB-8zar:
EmrAB-TolC MFS-type tripartite multidrug efflux pump FA
Method: single particle / : Du D, Zhong Z, Tuerxunjiang M

EMDB-60274:
SARS-CoV-2 XBB.1.5 spike glycoprotein trimer in complex with antigen-binding fragments (Fabs)
Method: single particle / : Sugita Y, Kimura K, Noda T, Hashiguchi T

EMDB-37440:
Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Method: single particle / : Suzuki K, Mikuriya S, Adachi N, Kawasaki M, Senda T, Moriya T, Murata T

PDB-8wci:
Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Method: single particle / : Suzuki K, Mikuriya S, Adachi N, Kawasaki M, Senda T, Moriya T, Murata T

EMDB-39237:
The pre-fusion structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

EMDB-39238:
The early intermediate structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

PDB-8yg6:
The pre-fusion structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

PDB-8yg8:
The early intermediate structure of baculovirus fusion protein GP64
Method: single particle / : Du D, Guo J, Li S

EMDB-43736:
Umb1 umbrella toxin particle
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w20:
Umb1 umbrella toxin particle
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w22:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-42070:
DpHF18 filament
Method: helical / : Lynch EM, Shen H, Kollman JM, Baker D

EMDB-42075:
DpHF7 filament
Method: helical / : Lynch EM, Farrell D, Shen H, Kollman JM, DiMaio F, Baker D

EMDB-42088:
DpHF19 filament
Method: helical / : Lynch EM, Shen H, Kollman JM, Baker D

PDB-8uao:
DpHF18 filament
Method: helical / : Lynch EM, Shen H, Kollman JM, Baker D

PDB-8ub3:
DpHF7 filament
Method: helical / : Lynch EM, Farrell D, Shen H, Kollman JM, DiMaio F, Baker D

PDB-8ubg:
DpHF19 filament
Method: helical / : Lynch EM, Shen H, Kollman JM, Baker D

EMDB-41153:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-41154:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-35041:
Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A
Method: single particle / : Suzuki H, Fujiyoshi Y, Imai S, Shimada I

EMDB-36046:
Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused)
Method: single particle / : Suzuki H, Fujiyoshi Y, Imai S, Shimada I

PDB-8huj:
Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A
Method: single particle / : Suzuki H, Fujiyoshi Y, Imai S, Shimada I

PDB-8j7r:
Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused)
Method: single particle / : Suzuki H, Fujiyoshi Y, Imai S, Shimada I

EMDB-33643:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab816
Method: single particle / : Uchikubo T, Shirouzu M

EMDB-33644:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab803
Method: single particle / : Uchikubo T, Shirouzu M

PDB-7y6l:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab816
Method: single particle / : Uchikubo T, Shirouzu M

PDB-7y6n:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab803
Method: single particle / : Uchikubo T, Shirouzu M

EMDB-40557:
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
Method: single particle / : Borst AJ, Bennett NR

PDB-8sk7:
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
Method: single particle / : Borst AJ, Bennett NR

EMDB-33065:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab765
Method: single particle / : Kamada K, Shirouzu M

EMDB-33066:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab712
Method: single particle / : Kamada K, Shirouzu M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more