[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,691 items for (author: hiro & f)

EMDB-63297:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63331:
Consensus map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63332:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63333:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63334:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63335:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the C-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63336:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the N-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63337:
Composite map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63339:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63508:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-63509:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63510:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63511:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-65889:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lqj:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lrk:
Cryo-EM structure of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

PDB-9lrm:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lyi:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

PDB-9wdc:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-64920:
Cryo-EM structure of CARD1 ectodomain
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-64934:
Cryo-EM structure of a CARD1 ectodomain H197A/H199A/H222A mutant
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-68666:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

PDB-22tu:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

EMDB-65577:
Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65578:
Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65579:
Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65580:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65581:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65583:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65584:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-2
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65585:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65586:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-B
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65587:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-C
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2r:
Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2s:
Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2t:
Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2u:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2v:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2x:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2y:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-2
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2z:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-64377:
Glycogen phosphorylase tetramer from E. coli
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-64393:
Glycogen phosphorylase dimer from E. coli in complex with AMP.
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-65039:
Glycogen phosphorylase tetramer from E. coli in complex with AMP
Method: single particle / : Takai M, Fukuda Y, Inoue T

PDB-9uoe:
Glycogen phosphorylase tetramer from E. coli
Method: single particle / : Takai M, Fukuda Y, Inoue T

PDB-9upe:
Glycogen phosphorylase dimer from E. coli in complex with AMP.
Method: single particle / : Takai M, Fukuda Y, Inoue T

PDB-9vfv:
Glycogen phosphorylase tetramer from E. coli in complex with AMP
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-75112:
SK3D-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75120:
OX1-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75121:
SK5A-Matured apo state in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more