[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 828 items for (author: henning & u)

EMDB-53417:
Human UPF1 in complex with the histone stem loop RNA
Method: single particle / : Machado de Amorim A, Loll B, Hilal T, Chakrabarti S

PDB-9qwn:
Human UPF1 in complex with the histone stem loop RNA
Method: single particle / : Machado de Amorim A, Loll B, Hilal T, Chakrabarti S

EMDB-51643:
State 2 MAP 1 SETD2 bound to proximal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54537:
State 1 MAP3 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9gw2:
State 2 MAP 1 SETD2 bound to proximal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9s3g:
State 1 MAP3 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54254:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 2 (H2- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtv:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-54253:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 1 (H1- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55123:
Structure of 70S ribosome-apramycin complex with tRNAs in classic state (C)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55124:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 1 (H1)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55125:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 2 (H2)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtu:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2t:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2u:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-54247:
State 2 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54399:
State 3 MAP 1 SETD2 bound to distal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54400:
State 3 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54425:
State 3 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to distal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54538:
State 1 MAP1 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54541:
State 1 MAP2 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54542:
State 1 MAP4 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rtn:
State 2 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rzc:
State 3 MAP 1 SETD2 bound to distal H3 of upstream nucleosome
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9rzd:
State 3 MAP 2 SPT6 with SETD2
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

PDB-9s0u:
State 3 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to distal upstream H3
Method: single particle / : Walshe JL, Ochmann M, Dienemann C, Cramer P

EMDB-54196:
Activated elongation complex with IWS1 and ELOF1 - MAP2 - focused classification of particles with IWS1 core without ELOF1
Method: single particle / : Walshe JL, Cramer P

EMDB-54197:
Activated elongation complex with IWS1 and ELOF1 - MAP3 - focused classification of particles with ELOF1
Method: single particle / : Walshe JL, Cramer P

EMDB-54201:
Activated elongation complex with IWS1 and ELOF1 - MAP4 - focused classification of PAF1 LEO1
Method: single particle / : Walshe JL, Cramer P

EMDB-54202:
Activated elongation complex with IWS1 and ELOF1 - MAP5 - focused classification of SPT6 tSH2 domain and CDC73
Method: single particle / : Walshe JL, Cramer P

EMDB-54203:
Activated elongation complex with IWS1 and ELOF1 - MAP6 - focused classification of CTR9 and WDR61
Method: single particle / : Walshe JL, Cramer P

EMDB-54205:
Activated elongation complex with IWS1 and ELOF1 - MAP7 - focused classification of SPT6
Method: single particle / : Walshe JL, Cramer P

EMDB-54206:
Activated elongation complex with IWS1 and ELOF1 - MAP8 - focused classification of ELOF1
Method: single particle / : Walshe JL, Cramer P

EMDB-54207:
Activated elongation complex with IWS1 and ELOF1 - MAP9 - focused classification of IWS1
Method: single particle / : Walshe JL, Cramer P

EMDB-54208:
Activated elongation complex with IWS1 and ELOF1 - MAP10 - Pol II local refinement of PAF1 and LEO1 containing particles
Method: single particle / : Walshe JL, Cramer P

EMDB-54209:
Activated elongation complex with IWS1 and ELOF1 - MAP11 - Pol II local refinement of CTR9 containing particles
Method: single particle / : Walshe JL, Cramer P

EMDB-54210:
Activated elongation complex with IWS1 and ELOF1 - MAP12 - Pol II local refinement of ELOF1,IWS1 and SPT6 containing particles
Method: single particle / : Walshe JL, Cramer P

EMDB-54251:
Activated Elongation Complex with IWS1 and ELOF1
Method: single particle / : Walshe JL, Cramer P

PDB-9rtt:
Activated Elongation Complex with IWS1 and ELOF1
Method: single particle / : Walshe JL, Cramer P

EMDB-61859:
Cryo-EM structure of human XPR1 in apo state
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61860:
Cryo-EM structure of apo human XPR1, class 1, with one visible SPX domain
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

EMDB-61861:
Cryo-EM structure of apo human XPR1, class 2, with asymmetrically dimerized SPX domains
Method: single particle / : Wang X, Bai Z, Wallis C, Wang H, Han Y, Jin R, Lei M, Gu C, Jessen H, Shears S, Sun Y, Corry B, Zhang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more