[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 862 items for (author: he & hk)

EMDB-74628:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

PDB-9zrr:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

EMDB-57178:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57179:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57180:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57298:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57299:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57301:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57302:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57303:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57304:
CUL1-C-terminus-RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57305:
SKP1-CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57306:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57308:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57309:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57310:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57311:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hg:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hh:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hi:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-71417:
Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles
Method: single particle / : Wu C, Meuser ME, Xiong Y

EMDB-71418:
CA-SP1 immature lattice assembled in vitro with inhibitor lenacapavir (dialyzed to 50nM)
Method: single particle / : Wu C, Meuser ME, Xiong Y

PDB-9p9l:
Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles
Method: single particle / : Wu C, Meuser ME, Xiong Y

PDB-9p9m:
CA-SP1 immature lattice assembled in vitro with inhibitor lenacapavir (dialyzed to 50nM)
Method: single particle / : Wu C, Meuser ME, Xiong Y

EMDB-67195:
E.coli delta lepA 30S ribosomal subunit class A
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67196:
E.coli delta lepA 30S ribosomal subunit class B
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67197:
E.coli delta lepA 30S ribosomal subunit class C
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67198:
E.coli delta lepA 30S ribosomal subunit class A, head domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67199:
E.coli delta lepA 30S ribosomal subunit class B, head domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67200:
E.coli delta lepA 30S ribosomal subunit class C, head domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67201:
E.coli delta lepA 30S ribosomal subunit class C, body domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67202:
E.coli delta lepA 30S ribosomal subunit class B, body domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-67203:
E.coli delta lepA 30S ribosomal subunit class A, body domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

PDB-9xtc:
E.coli delta lepA 30S ribosomal subunit class C, body domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

PDB-9xtd:
E.coli delta lepA 30S ribosomal subunit class B, body domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

PDB-9xte:
E.coli delta lepA 30S ribosomal subunit class A, body domain
Method: single particle / : Kravchenko OV, Maksimova EM, Baymukhametov TN, Stolboushkina EA

EMDB-53238:
Invasive protrusion of a flam-del-412-St2 Drosophila follicle
Method: electron tomography / : Voichek M, Bernhard A, Brennecke J

EMDB-73884:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

EMDB-74737:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

EMDB-74738:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

EMDB-74739:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

EMDB-74740:
Stabilized SARS-CoV-2 S2 apo
Method: single particle / : Park S, Ward AB

EMDB-75193:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-A epitope)
Method: single particle / : Park S, Ward AB

EMDB-75194:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-B epitope)
Method: single particle / : Park S, Ward AB

EMDB-75295:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-10mu:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-9z80:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

PDB-9zt5:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

PDB-9zt6:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

PDB-9zt7:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more