[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,156 items for (author: he & gd)

EMDB-73364:
Factor XIa in complex with Fab fragment of REGN7508-Cat
Method: single particle / : Saotome K, Franklin MC

EMDB-73374:
Factor XIa in complex with Fab fragment of REGN9933-A2
Method: single particle / : Saotome K, Franklin MC

EMDB-66677:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state A
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66678:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state B1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66679:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Tsr1-1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66680:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Tsr1-2
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66681:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Tsr1-3
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66682:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Rrp12-A1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66683:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Rrp12-A2
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66684:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Rio2-C
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66685:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state a
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66686:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66687:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1*
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66688:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state Tsr1-1*
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66689:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state Rrp12-A1*
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66690:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state Rrp12-A1**
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-66691:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 Mut ) from Chaetomium thermophilum, state Rio2-C*
Method: single particle / : Lau B, Li Y, Zhu J, Fisher P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xa7:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state A
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xa8:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state B1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xa9:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Tsr1-1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xaa:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Tsr1-2
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xab:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Tsr1-3
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xac:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Rrp12-A1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xad:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Rrp12-A2
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xae:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state Rio2-C
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xaf:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state a
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xag:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xah:
Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1*
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xai:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state Tsr1-1*
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xaj:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state Rrp12-A1*
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

PDB-9xak:
Cryo-EM structure of the pre-40S ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state Rrp12-A1**
Method: single particle / : Lau B, Li Y, Zhu J, Fischer P, Hong X, Yuan R, Beckmann R, Hurt E, Cheng J

EMDB-77065:
CryoEM structure of AdhE spirosome from Clostridium thermocellum uncovered by visual proteomics.
Method: helical / : Agdanowski MP, Rodriguez JA, Moser T, Evans JE

PDB-13he:
CryoEM structure of AdhE spirosome from Clostridium thermocellum uncovered by visual proteomics.
Method: helical / : Agdanowski MP, Rodriguez JA, Moser T, Evans JE

EMDB-65024:
CryoEM structure of phospholipid-independent cyclised RP4 pilus
Method: helical / : Ishimoto N, Beis K

PDB-9vf4:
CryoEM structure of phospholipid-independent cyclised RP4 pilus
Method: helical / : Ishimoto N, Beis K

EMDB-53943:
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-54009:
Manikomycin bound to the Escherichia coli 70S ribosome
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-52502:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (composite map)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-68033:
CryoEM map of the ATPase domain of SMARCA4 and the finger helix of BCL7A bound to a nucleosome
Method: single particle / : Xu W, Chen Y, Cheng J

EMDB-68034:
Cryo-EM map of the ATPase domain of SMARCA4 bound to a nucleosome
Method: single particle / : Xu W, Chen Y, Cheng J

EMDB-68040:
Cryo-EM structure of ncBAF bound to the nucleosome
Method: single particle / : Xu W, Cheng J, Chen Y

PDB-21vv:
Cryo-EM structure of ncBAF bound to the nucleosome
Method: single particle / : Xu W, Cheng J, Chen Y

PDB-21wa:
Cryo-EM structure of the ATPase domain of SMARCA4 bound to a nucleosome
Method: single particle / : Xu W, Chen Y, Cheng J

PDB-21wc:
Cryo-EM structure of the ATPase domain of SMARCA4 and the finger helix of BCL7A bound to a nucleosome
Method: single particle / : Xu W, Chen Y, Cheng J

EMDB-73226:
HBV wildtype capsid with packaged E. coli RNA
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-73227:
Focused map of HBV with BAY41-4109
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-73229:
Focused map of HBV Capsid with compound HAP12
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-71611:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in NTP-bound elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

EMDB-71612:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in pre-reaction elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

EMDB-71613:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in pre-translocation elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more