[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 108 items for (author: hay & dl)

EMDB-47126:
Cryo-EM map of the human TREX-2.1 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46983:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to the N-terminal motif of DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46985:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlr:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to the N-terminal motif of DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlv:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46981:
Cryo-EM map of human TREX-2 complex bound to full-length DDX39B
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46982:
Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlp:
Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-42775:
Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)
Method: single particle / : Hayes BK, Venugopal H, McGowan S

EMDB-42792:
Acinetobacter baumannii Tse15 Rhs effector
Method: single particle / : Hayes BK, Venugopal H, McGowan S

EMDB-42690:
Heterochromatin protein 1 (HP1) alpha in complex with an H2A.Z nucleosome(focused refined map)
Method: single particle / : Tan D

EMDB-42692:
K9me3-H2A.Z nucleosome from focus refinement of the HP1-H2A.Z nucleosome complex
Method: single particle / : Tan D

EMDB-42773:
structure of the K9me3-H2A.Z nucleosome
Method: single particle / : Tan D

EMDB-42774:
Structure of Heterochromatin Protein 1 (HP1) alpha in complex with an H2A.Z nucleosome
Method: single particle / : Tan D, Sokolova V

PDB-8uxq:
Structure of Heterochromatin Protein 1 (HP1) alpha in complex with an H2A.Z nucleosome
Method: single particle / : Tan D, Sokolova V

PDB-8rwz:
Open non-crosslinked structure Brd4BD2-MZ1-(NEDD8)-CRL2VHL
Method: single particle / : Crowe C, Nakasone MA, Ciulli A

PDB-8rx0:
(NEDD8)-CRL2VHL-MZ1-Brd4BD2-Ub(G76S, K48C)-UBE2R1(C93K, S138C, C191S, C223S)-Ub
Method: single particle / : Crowe C, Nakasone MA, Ciulli A

EMDB-19567:
Closed crosslinked structure of (NEDD8)-CRL2VHL-MZ1-Brd4BD2-Ub(G76S, K48C)-UBE2R1(C93K, S138C, C191S, C223S)-Ub
Method: single particle / : Ciulli A, Crowe C, Nakasone MA

EMDB-19569:
Open non-crosslinked structure Brd4BD2-MZ1-(NEDD8)-CRL2VHL
Method: single particle / : Ciulli A, Crowe C, Nakasone MA

EMDB-16966:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-16967:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-16968:
Small subunit of yeast mitochondrial ribosome.
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17089:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (overall refinement)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17090:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on the body)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17091:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on the head)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17092:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on the tail)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17093:
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22 (local-masked refined on METTL17/Rsm22)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17094:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (overall refinement)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17095:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (local-masked refined on the body)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17096:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (local-masked refined on the head)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17097:
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23 (local-masked refined on the tail)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17098:
Small subunit of yeast mitochondrial ribosome (overall refinement)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17099:
Small subunit of yeast mitochondrial ribosome (local-masked refined on the body)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17100:
Small subunit of yeast mitochondrial ribosome(local-masked refined on the head)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17101:
Small subunit of yeast mitochondrial ribosome(local-masked refined on the tail)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-17102:
Small subunit of yeast mitochondrial ribosome(local-masked refined on the helix bundle)
Method: single particle / : Itoh Y, Chicherin I, Kamenski P, Amunts A

EMDB-18350:
S. cerevisia Niemann-Pick type C protein NCR1 in GDN at pH 7.5
Method: single particle / : Frain KM, Dedic E, Nel L, Olesen E, Stokes D, Panyella Pedersen B

EMDB-18351:
S. cerevisia Niemann-Pick type C protein NCR1 in GDN at pH 5.5
Method: single particle / : Frain KM, Dedic E, Nel L, Olesen E, Stokes D, Panyella Pedersen B

EMDB-18352:
S. cerevisia Niemann-Pick type C protein NCR1 in LMNG at pH 5.5
Method: single particle / : Frain KM, Nel L, Dedic E, Olesen E, Stokes D, Panyella Pedersen B

EMDB-18353:
S. cerevisia Niemann-Pick type C protein NCR1 in Peptidisc at pH 7.5
Method: single particle / : Frain KM, Dedic E, Nel L, Olesen E, Stokes D, Panyella Pedersen B

EMDB-26180:
Calcitonin Receptor in complex with Gs and rat amylin peptide, CT-like state
Method: single particle / : Cao J, Belousoff MJ, Johnson RM, Wootten DL, Sexton PM

EMDB-26188:
Calcitonin Receptor in complex with Gs and salmon calcitonin peptide
Method: single particle / : Cao J, Belousoff MJ, Johnson RM, Wootten DL, Sexton PM

EMDB-26197:
Human Amylin2 Receptor in complex with Gs and rat amylin peptide
Method: single particle / : Cao J, Belousoff MJ, Johnson RM, Wootten DL, Sexton PM

EMDB-26178:
Human Amylin1 Receptor in complex with Gs and rat amylin peptide
Method: single particle / : Cao J, Belousoff MJ

EMDB-26179:
Human Amylin2 Receptor in complex with Gs and human calcitonin peptide
Method: single particle / : Cao J, Belousoff MJ

EMDB-26184:
Calcitonin Receptor in complex with Gs and rat amylin peptide, bypass motif
Method: single particle / : Cao J, Belousoff MJ

EMDB-26190:
Calcitonin receptor in complex with Gs and human calcitonin peptide
Method: single particle / : Cao J, Belousoff MJ

EMDB-26196:
Human Amylin1 Receptor in complex with Gs and salmon calcitonin peptide
Method: single particle / : Cao J, Belousoff MJ

EMDB-26199:
Human Amylin2 Receptor in complex with Gs and salmon calcitonin peptide
Method: single particle / : Cao J, Belousoff MJ

EMDB-26208:
Human Amylin3 Receptor in complex with Gs and rat amylin peptide
Method: single particle / : Cao J, Belousoff MJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more