[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 95 items for (author: hanwen & z)

EMDB-66192:
Cyro-EM structure of the ACT-451840-bound PfMDR1
Method: single particle / : Zhao Z, Li J, Wang X, Liu X, Wang N, Xu H, Quan C, Kato N, Deng D, Jing X

PDB-9ws4:
Cyro-EM structure of the ACT-451840-bound PfMDR1
Method: single particle / : Zhao Z, Li J, Wang X, Liu X, Wang N, Xu H, Quan C, Wang X, Kato N, Deng D, Jing X

EMDB-62992:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1 top)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-63000:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-63002:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65164:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1 top)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65166:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65168:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9ld2:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9ldj:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9vls:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

PDB-9vlt:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-49659:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-49901:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9nqj:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9nxc:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-44435:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9bcr:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-43234:
Cryo-EM structure of Rab12-LRRK2 complex in the LRRK2 monomer state
Method: single particle / : Zhu H, Sun J

EMDB-43235:
Cryo-EM structure of Rab12-LRRK2 complex in the LRRK2 dimer state
Method: single particle / : Zhu H, Sun J

PDB-8vh4:
Cryo-EM structure of Rab12-LRRK2 complex in the LRRK2 monomer state
Method: single particle / : Zhu H, Sun J

PDB-8vh5:
Cryo-EM structure of Rab12-LRRK2 complex in the LRRK2 dimer state
Method: single particle / : Zhu H, Sun J

EMDB-37515:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with antidepressant desipramine in KCl condition.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-37520:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with norepinephrine in nanodisc.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-39729:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant atomoxetine in an outward-open state at resolution of 3.4 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8wgr:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with antidepressant desipramine in KCl condition.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8wgx:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with norepinephrine in nanodisc.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8z1l:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant atomoxetine in an outward-open state at resolution of 3.4 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-35157:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant escitalopram in an inward-open state at resolution of 2.85 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8i3v:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant escitalopram in an inward-open state at resolution of 2.85 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34718:
Cryo-EM structure of human norepinephrine transporter NET in an inward-open state at resolution of 2.5 angstrom
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34719:
Cryo-EM structure of human norepinephrine transporter NET in the presence of norepinephrine in an inward-open state at resolution of 2.9 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34720:
Cryo-EM structure of human norepinephrine transporter NET in the presence of dopamine in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34721:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant desipramine in an inward-open state at resolution of 2.5 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-34722:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant bupropion in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfe:
Cryo-EM structure of human norepinephrine transporter NET in an inward-open state at resolution of 2.5 angstrom
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hff:
Cryo-EM structure of human norepinephrine transporter NET in the presence of norepinephrine in an inward-open state at resolution of 2.9 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfg:
Cryo-EM structure of human norepinephrine transporter NET in the presence of dopamine in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfi:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant desipramine in an inward-open state at resolution of 2.5 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8hfl:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant bupropion in an inward-open state at resolution of 3.0 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-41982:
Cryo-EM structure of LRRK2 bound to type I inhibitor GNE-7915
Method: single particle / : Zhu H, Sun J

EMDB-41985:
Cryo-EM structure of LRRK2 bound to type II inhibitor GZD824
Method: single particle / : Zhu H, Sun J

EMDB-42019:
Cryo-EM structure of LRRK2 bound to type II inhibitor ponatinib
Method: single particle / : Zhu H, Sun J

EMDB-42020:
Cryo-EM structure of LRRK2 bound to type II inhibitor rebastinib
Method: single particle / : Zhu H, Sun J

PDB-8u7h:
Cryo-EM structure of LRRK2 bound to type I inhibitor GNE-7915
Method: single particle / : Zhu H, Sun J

PDB-8u7l:
Cryo-EM structure of LRRK2 bound to type II inhibitor GZD824
Method: single particle / : Zhu H, Sun J

PDB-8u8a:
Cryo-EM structure of LRRK2 bound to type II inhibitor ponatinib
Method: single particle / : Zhu H, Sun J

PDB-8u8b:
Cryo-EM structure of LRRK2 bound to type II inhibitor rebastinib
Method: single particle / : Zhu H, Sun J

EMDB-29340:
Cryo-EM structure of LRRK2 bound to type I inhibitor LRRK2-IN-1
Method: single particle / : Zhu H, Sun J

PDB-8fo7:
Cryo-EM structure of LRRK2 bound to type I inhibitor LRRK2-IN-1
Method: single particle / : Zhu H, Sun J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more