[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 45 items for (author: han & fz)

EMDB-50585:
Icosahedral Encapsulin with a closed pore state
Method: single particle / : Capper MJ, Kohhnke J

PDB-9fn9:
Icosahedral Encapsulin with a closed pore state
Method: single particle / : Capper MJ, Kohhnke J

EMDB-50586:
CryoEM structure of Encapsulin::tdNfsB with an open pore state
Method: single particle / : Capper MJ, Kohhnke J

PDB-9fna:
CryoEM structure of Encapsulin::tdNfsB with an open pore state
Method: single particle / : Capper MJ, Kohhnke J

EMDB-36094:
Cryo-EM map of Euglena gracilis respiratory complex I in the deactive state, peripheral arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36096:
Cryo-EM map of Euglena gracilis respiratory complex I in the deactive state, proximal membrane arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36097:
Cryo-EM map of Euglena gracilis respiratory complex I in the deactive state, distal membrane arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36098:
Cryo-EM consensus map of Euglena gracilis respiratory complex I, deactive state
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36099:
Cryo-EM map of Euglena gracilis respiratory complex I in the turnover state, peripheral arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36100:
Cryo-EM map of Euglena gracilis respiratory complex I in the turnover state, proximal membrane arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36101:
Cryo-EM map of Euglena gracilis respiratory complex I in the turnover state, distal membrane arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36102:
Cryo-EM consensus map of Euglena gracilis respiratory complex I, turnover state
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36103:
Cryo-EM map of Euglena gracilis respiratory complex I in the NADH state, peripheral arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36104:
Cryo-EM map of Euglena gracilis respiratory complex I in the NADH state, proximal membrane arm focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36105:
Cryo-EM map of Euglena gracilis respiratory complex I in the NADH state, distal membrane focused
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36106:
Cryo-EM consensus map of Euglena gracilis respiratory complex I, NADH state
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36107:
Cryo-EM composite map of Euglena gracilis respiratory complex I, deactive state
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36108:
Cryo-EM composite map of Euglena gracilis complex I, turnover state
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-36109:
Cryo-EM composite map of Euglena gracilis complex I, NADH state
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-29452:
Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
Method: single particle / : Yu X, Abeywickrema P, Bonneux B, Behera I, Jacoby E, Fung A, Adhikary S, Bhaumik A, Carbajo RJ, Bruyn SD, Miller R, Patrick A, Pham Q, Piassek M, Verheyen N, Shareef A, Sutto-Ortiz P, Ysebaert N, Vlijmen HV, Jonckers THM, Herschke F, McLellan JS, Decroly E, Fearns R, Grosse S, Roymans D, Sharma S, Rigaux P, Jin Z

PDB-8fu3:
Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
Method: single particle / : Yu X, Abeywickrema P, Bonneux B, Behera I, Jacoby E, Fung A, Adhikary S, Bhaumik A, Carbajo RJ, Bruyn SD, Miller R, Patrick A, Pham Q, Piassek M, Verheyen N, Shareef A, Sutto-Ortiz P, Ysebaert N, Vlijmen HV, Jonckers THM, Herschke F, McLellan JS, Decroly E, Fearns R, Grosse S, Roymans D, Sharma S, Rigaux P, Jin Z

EMDB-36375:
Cryo-EM map of Tetrahymena thermophila megacomplex IV2+(I+III2+II)2
Method: single particle / : Wu MC, Hu YQ, Han FZ, He ZX, Tian HT, Zhou L

EMDB-36374:
Cryo-EM map of Tetrahymena thermophila supercomplex IV+I+III2+II
Method: single particle / : Wu MC, He ZX, Tian HT, Hu YQ, Han FZ, Zhou L

EMDB-15118:
13pf undecorated microtubule from recombinant human tubulin (alpha1B, beta3) lacking the C-terminal tail
Method: helical / : Ebberink E, Fernandes S, Hatzopoulos GN, Agashe N, Guidotti N, Reichart T, Reymond L, Velluz MC, Schneider FZ, Pourroy C, Janke C, Gonczy P, Aumeier C, Fierz B

EMDB-15119:
13pf undecorated microtubule from recombinant human tubulin (alpha1B, beta3) with spliced unmodified C-terminal tail on alpha1B.
Method: helical / : Ebberink E, Fernandes S, Hatzopoulos GN, Agashe N, Guidotti N, Reichart T, Reymond L, Velluz MC, Schneider FZ, Pourroy C, Janke C, Gonczy P, Aumeier C, Fierz B

EMDB-15120:
13pf undecorated microtubule from recombinant human tubulin (alpha1B, beta3) with spliced C-terminal tail containing 10E branch on alpha1B.
Method: helical / : Ebberink E, Fernandes S, Hatzopoulos GN, Agashe N, Guidotti N, Reichart T, Reymond L, Velluz MC, Schneider FZ, Pourroy C, Janke C, Gonczy P, Aumeier C, Fierz B

EMDB-34373:
Cryo-EM structure of Tetrahymena thermophila respiratory mega-complex MC IV2+(I+III2+II)2
Method: single particle / : Wu MC, Hu YQ, Han FZ, Zhou L

EMDB-34403:
Cryo-EM structure of Tetrahymena thermophila respiratory Megacomplex MC (IV2+I+III2+II)2
Method: single particle / : Wu MC, Hu YQ, Han FZ, Zhou L

EMDB-14171:
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF
Method: single particle / : Ye FZ, Zhang XD

EMDB-14172:
CryoEM structure of bacterial transcription intermediate complex mediated by activator protein PspF
Method: single particle / : Ye FZ, Zhang XD

EMDB-14190:
CryoEM structure of bacterial transcription close complex (RPc)
Method: single particle / : Ye FZ, Zhang XD

EMDB-14200:
Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-14206:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-14207:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-14208:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Ye FZ, Zhang XD

EMDB-31232:
Structural basis for the tethered peptide activation of adhesion GPCRs
Method: single particle / : Ping YQ, Xiao P, Yang F, Zhao RJ, Guo SC, Yan X, Wu X, Sun JP

EMDB-31254:
GPR114-Gs-scFv16 complex
Method: single particle / : Ping Y

EMDB-12156:
Structures of class II bacterial transcription complexes
Method: single particle / : Hao M, Ye FZ

EMDB-12157:
Structures of class I bacterial transcription complexes
Method: single particle / : Ye FZ, Hao M

EMDB-4769:
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage
Method: single particle / : Ye FZ, Zhang XD

EMDB-4770:
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
Method: single particle / : Ye FZ, Zhang XD

EMDB-0001:
Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme transcription open complex
Method: single particle / : Glyde R, Ye FZ

EMDB-0002:
Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme intermediate partially loaded complex
Method: single particle / : Glyde R, Ye FZ

EMDB-4397:
Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme initial transcribing complex
Method: single particle / : Glyde R, Ye FZ

EMDB-3697:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex
Method: single particle / : Glyde R, Ye FZ, Darbari VC, Zhang N, Buck M, Zhang XD

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more