[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 47 items for (author: halfmann & p)

EMDB-48548:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48549:
SARS-CoV-2 S2 monomer in complex with NICA01B-1113 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48550:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr1:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr2:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-44747:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

PDB-9bop:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

EMDB-46892:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

PDB-9dhy:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

EMDB-45833:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45834:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45835:
3A6 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45836:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45837:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-27112:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (global refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

EMDB-27113:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

PDB-8d0z:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-25471:
Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound
Method: single particle / : Milligan JC, Yu X

PDB-7swd:
Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound
Method: single particle / : Milligan JC, Yu X, Saphire EO

EMDB-9332:
Helical assembly of the CARD9 CARD
Method: helical / : Holliday MJ, Rohou A

PDB-6n2p:
Helical assembly of the CARD9 CARD
Method: helical / : Holliday MJ, Rohou A, Arthur CP, Dueber EC, Fairbrother WJ

EMDB-7908:
VIC170 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7909:
VIC169 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7910:
VIC167 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7911:
VIC166 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7912:
VIC165 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7914:
VIC1164 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7915:
VIC163 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7926:
VIC82 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7927:
VIC43 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7928:
VIC32 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7929:
VIC26 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7930:
VIC16 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7931:
VIC15 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7932:
VIC12 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7933:
VIC11 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7922:
VIC133 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7923:
VIC101 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7924:
VIC94 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7925:
VIC91 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7934:
VIC130 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7916:
VIC161 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7917:
VIC160 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7918:
VIC158 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7919:
VIC157 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7920:
VIC142 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

EMDB-7921:
VIC139 Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Pallesen J, Ward AB

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more