[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 49 items for (author: gumpper & rh)

EMDB-44865:
Local refinement of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

EMDB-44866:
Global reconstruction of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Kim K, Gumpper RH, Fay JF, Roth BL

EMDB-44945:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking local map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44946:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking, local refinement of heterotrimer
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44961:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking global map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-45616:
CryoEM Structure of HCA2 DREADD Gi1 in complex with FCH-2296413 (Local Refinement)
Method: single particle / : Krumm BE, Kang HJ, Diberto JF, Kapolka NJ, Gumpper RH, Olsen RHJ, Huang XP, Zhang S, Fay JF, Roth BL

EMDB-43797:
Local refinement of 5-HT2AR bound to 5-HT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43798:
Global reconstruction 5-HT2AR bound to 5-HT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43799:
Local refinement of 5-HT2AR bound to 2-bromo-LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43800:
Global reconstruction of 5-HT2AR bound to 2-bromo-LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43801:
Local refinement of 5-HT2AR bound to DMT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43802:
Global reconstruction of 5-HT2AR bound to DMT in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43803:
Local refinement of 5-HT2AR bound to LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43804:
Global reconstruction of 5-HT2AR bound to LSD in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43805:
Local refinement of 5-HT2AR bound to Mescaline in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43806:
Global reconstruction of 5-HT2AR bound to mescaline in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43807:
Local refinement of 5-HT2AR bound to psilocin in complex with a mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43808:
Global reconstruction of 5-HT2AR bound to psilocin in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43809:
Local refinement of 5-HT2AR bound to RS130-180 in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-43810:
Global reconstruction of 5-HT2AR bound to RS130-180 in complex with a mini-Gq protein and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-42538:
CryoEM Structure of HCA2-Gi1 in complex with MK-1903
Method: single particle / : Krumm BE, Kang HJ, Diberto JF, Kapolka NJ, Gumpper RH, Olsen RHJ, Huang XP, Zhang S, Fay JF, Roth BL

EMDB-42587:
CryoEM Structure of HCA2 DREADD Gi1 in complex with FCH-2296413
Method: single particle / : Krumm BE, Kang HJ, Diberto JF, Kapolka NJ, Gumpper RH, Olsen RHJ, Huang XP, Zhang S, Fay JF, Roth BL

EMDB-47113:
CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-2825
Method: single particle / : Cao C, Wang C, Liu Y, Fay JF, Roth BL

EMDB-47114:
CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-3945
Method: single particle / : Cao C, Wang C, Liu Y, Fay JF, Roth BL

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-43647:
CryoEM structure of Gi-coupled TAS2R14 with cholesterol and an intracellular tastant
Method: single particle / : Kim Y, Gumpper RH, Roth BL

EMDB-43650:
CryoEM structure of Ggust-coupled TAS2R14 with cholesterol and an intracellular tastant
Method: single particle / : Kim Y, Gumpper RH, Roth BL

EMDB-43656:
CryoEM structure of Gi-coupled TAS2R14 with cholesterol and an intracellular tastant (Locally refined map)
Method: single particle / : Kim Y, Gumpper RH, Roth BL

EMDB-43657:
CryoEM structure of Ggust-coupled TAS2R14 with cholesterol and an intracellular tastant (Locally refined map)
Method: single particle / : Kim Y, Gumpper RH, Roth BL

EMDB-27966:
CryoEM structure of miniGq-coupled hM3Dq in complex with DCZ
Method: single particle / : Zhang S, Fay JF, Roth BL

EMDB-27967:
CryoEM structure of miniGo-coupled hM4Di in complex with DCZ
Method: single particle / : Zhang S, Fay JF, Roth BL

EMDB-27968:
CryoEM structure of miniGq-coupled hM3Dq in complex with CNO
Method: single particle / : Zhang S, Fay JF, Roth BL

EMDB-27969:
CryoEM structure of miniGq-coupled hM3R in complex with Iperoxo
Method: single particle / : Zhang S, Fay JF, Roth BL

EMDB-27970:
CryoEM structure of miniGq-coupled hM3R in complex with iperoxo (local refinement)
Method: single particle / : Zhang S, Fay JF, Roth BL

EMDB-27752:
CryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22
Method: single particle / : Liu Y, Cao C, Fay JF, Roth BL

EMDB-27753:
CryoEM structure of Gq-coupled MRGPRX1 with peptide ligand BAM8-22 and positive allosteric modulator ML382
Method: single particle / : Liu Y, Cao C, Fay JF, Roth BL

EMDB-27754:
CryoEM structure of Gq-coupled MRGPRX1 with ligand Compound-16
Method: single particle / : Liu Y, Cao C, Fay JF, Roth BL

EMDB-25401:
5-HT2B receptor bound to LSD obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Cao C

EMDB-25402:
5-HT2B receptor bound to LSD in complex with heterotrimeric mini-Gq protein obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K

EMDB-25403:
5-HT2B receptor bound to LSD in complex with beta-arrestin1 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Cao C, Panova O, Roth BL, Skiniotis G

EMDB-27633:
Cryo-EM structure of the 5HT2C receptor (INI isoform) bound to lorcaserin
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-27634:
Cryo-EM structure of the 5HT2C receptor (INI isoform) bound to psilocin
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-27635:
Cryo-EM structure of the 5HT2C receptor (VGV isoform) bound to lorcaserin
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-27636:
Cryo-EM structure of the 5HT2C receptor (VSV isoform) bound to lorcaserin
Method: single particle / : Gumpper RH, Fay JF, Roth BL

EMDB-24896:
CryoEM structure of Gq-coupled MRGPRX2 with peptide agonist Cortistatin-14
Method: single particle / : Cao C, Fay JF

EMDB-24897:
CryoEM structure of Gi-coupled MRGPRX2 with peptide agonist Cortistatin-14
Method: single particle / : Cao C, Fay JF

EMDB-24898:
CryoEM structure of Gq-coupled MRGPRX2 with small molecule agonist (R)-Zinc-3573
Method: single particle / : Cao C, Fay JF

EMDB-24899:
CryoEM structure of Gi-coupled MRGPRX2 with small molecule agonist (R)-Zinc-3573
Method: single particle / : Cao C, Fay JF

EMDB-24900:
CryoEM structure of Gq-coupled MRGPRX4 with small molecule agonist MS47134
Method: single particle / : Cao C, Fay JF

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more