[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 329 items for (author: gros & n)

EMDB-19014:
PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Method: single particle / : Debski-Antoniak O, Drulyte I, Hurdiss DL

EMDB-19015:
Local refinement of the PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Method: single particle / : Debski-Antoniak O, Hurdiss DL

EMDB-19016:
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Method: single particle / : Debski-Antoniak O, Hurdiss DL

EMDB-19017:
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Method: single particle / : Debski-Antoniak O, Drulyte I, Hurdiss DL

EMDB-17449:
S. cerevisiae nexus-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17458:
S. cerevisiae ssDNA-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17459:
S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17460:
S. cerevisiae sCMGE with N-ter Mcm10 density
Method: single particle / : Henrikus SS, Willhoft O

PDB-8p5e:
S. cerevisiae nexus-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

PDB-8p62:
S. cerevisiae ssDNA-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

PDB-8p63:
S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-18170:
YPEL5-bound WDR26-CTLH E3 ligase - assembly I
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18171:
YPEL5-bound WDR26-CTLH E3 ligase - assembly II
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18172:
NMNAT1 core-bound RANBP9-TWA1-WDR26 module of WDR26-CTLH E3 ligase
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18173:
NMNAT1 loop-bound RANBP9-TWA1-WDR26 module of WDR26-CTLH E3 ligase
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18174:
NMNAT1-bound WDR26-CTLH E3 ligase assembly I - class 1
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18175:
NMNAT1-bound WDR26-CTLH E3 ligase assembly I - class 2
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18176:
NMNAT1-bound WDR26-CTLH E3 ligase assembly II - class 1
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18177:
NMNAT1-bound WDR26-CTLH E3 ligase assembly II - class 2
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18178:
NMNAT1-bound WDR26-CTLH E3 ligase assembly II - class 3
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18316:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to YPEL5
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18345:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to NMNAT1 substrate
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

PDB-8qbn:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to YPEL5
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

PDB-8qe8:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to NMNAT1 substrate
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-19039:
Map of YPEL5-bound WDR26 dimer obtained by focused refinement of the WDR26-CTLH subcomplex
Method: single particle / : Chrustowicz J, Schulman BA

EMDB-41816:
Cryo-EM structure of the RAF1-HSP90-CDC37 complex in the closed state
Method: single particle / : Finci LI, Simanshu DK

EMDB-41817:
Cryo-EM structure of the HSP90 dimer (NTD-MD) in the semi-open state
Method: single particle / : Finci LI, Simanshu DK

EMDB-41818:
Cryo-EM structure of the cross-linked HSP90 dimer (NTD-MD) in the semi-open state
Method: single particle / : Finci LI, Simanshu DK

PDB-8u1l:
Cryo-EM structure of the RAF1-HSP90-CDC37 complex in the closed state
Method: single particle / : Finci LI, Simanshu DK

PDB-8u1m:
Cryo-EM structure of the HSP90 dimer (NTD-MD) in the semi-open state
Method: single particle / : Finci LI, Simanshu DK

PDB-8u1n:
Cryo-EM structure of the cross-linked HSP90 dimer (NTD-MD) in the semi-open state
Method: single particle / : Finci LI, Simanshu DK

EMDB-18941:
SARS-CoV-2 S (Spike) protein (BA.1) in complex with VHH Ma16B06 (sub-volume of two adjacent RBD-VHH modules)
Method: single particle / : Guttler T, Aksu M, Gorlich D

EMDB-40242:
BG505 MD39 SOSIP in complex with Rh.NJ85 wk12 gp120GH, N611/FP, and base epitope polyclonal antibodies
Method: single particle / : Lee WH, Ozorowski G, Torres JL, Ward AB

EMDB-40243:
BG505 MD39 SOSIP in complex with Rh.NJ86 wk12 V1V3, C3V5, N611/FP, and base epitope polyclonal antibodies
Method: single particle / : Lee WH, Ozorowski G, Torres JL, Ward AB

EMDB-40244:
BG505 MD39 SOSIP in complex with Rh.NJ76 wk12 C3V5, N611/FP, and base epitope polyclonal antibodies
Method: single particle / : Lee WH, Ozorowski G, Torres JL, Ward AB

EMDB-40252:
BG505 MD39 SOSIP in complex with Rh.NK04 wk12 gp120 glycan hole and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40254:
BG505 MD39 SOSIP in complex with Rh.NJ75 wk12 gp120 glycan hole and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40255:
BG505 MD39 SOSIP in complex with Rh.NJ87 wk12 C3V5 and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40256:
BG505 MD39 SOSIP in complex with Rh.NJ84 wk12 V1V3, gp120 glycan hole and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40257:
BG505 MD39 SOSIP in complex with Rh.NJ77 wk12 V1V3, C3V5, N611/FP and base epitope polyclonal
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

PDB-8fu3:
Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
Method: single particle / : Yu X, Abeywickrema P, Bonneux B, Behera I, Jacoby E, Fung A, Adhikary S, Bhaumik A, Carbajo RJ, Bruyn SD, Miller R, Patrick A, Pham Q, Piassek M, Verheyen N, Shareef A, Sutto-Ortiz P, Ysebaert N, Vlijmen HV, Jonckers THM, Herschke F, McLellan JS, Decroly E, Fearns R, Grosse S, Roymans D, Sharma S, Rigaux P, Jin Z

EMDB-16730:
Cryo-EM structure of complement C5 in complex with nanobodies UNbC5-1 and UNbC5-2
Method: single particle / : De la O Becerra KI, Gros P

PDB-8cml:
Cryo-EM structure of complement C5 in complex with nanobodies UNbC5-1 and UNbC5-2
Method: single particle / : De la O Becerra KI, Gros P

EMDB-17369:
A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.
Method: single particle / : Isupov MN, Opatowsky Y

EMDB-17370:
C. elegans TIR-1 protein.
Method: single particle / : Isupov MN, Opatowsky Y

PDB-8p2l:
A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.
Method: single particle / : Isupov MN, Opatowsky Y

PDB-8p2m:
C. elegans TIR-1 protein.
Method: single particle / : Isupov MN, Opatowsky Y

EMDB-26552:
Cryo-EM of pH-controlled and self-assembled fibers, peptide 2
Method: helical / : Wang F, Grosvirt-Dramen A, Hochbaum AI, Egelman EH

PDB-7uit:
Cryo-EM of pH-controlled and self-assembled fibers, peptide 2
Method: helical / : Wang F, Grosvirt-Dramen A, Hochbaum AI, Egelman EH

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more