[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 37 items for (author: griffiths & a)

EMDB-25618:
SARS-CoV-2 VFLIP spike boung to 2 Ab12 Fab fragments
Method: single particle / : Olmedillas E, Ollmann-Saphire E

EMDB-25663:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25689:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, global map with poorly-resolved RBDs and scFvs
Method: single particle / : Byrne PO, McLellan JS

EMDB-25690:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, local refinement map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25711:
SARS-CoV-2 S (Spike Glycoprotein) D614G with One(1) RBD Up
Method: single particle / : Byrne PO, McLellan JS

PDB-7t3m:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map
Method: single particle / : Byrne PO, McLellan JS

PDB-7t67:
SARS-CoV-2 S (Spike Glycoprotein) D614G with One(1) RBD Up
Method: single particle / : Byrne PO, McLellan JS

EMDB-27203:
IMM20190 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27192:
IMM20253 Fab complex with Trimer Spike protein of SARS-CoV-2 virus
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27193:
IMM20253 Fab complex with Spike monomer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27204:
IMM20184 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27081:
IMM20184 and IMM20253 Fabs in ternary complex with SARS-CoV-2 receptor binding domain
Method: single particle / : Robinson MK, Nikitin PN

EMDB-26322:
MVV cleaved synaptic complex (CSC) intasome at 3.4 A resolution
Method: single particle / : Shan Z, Pye VE, Cherepanov P, Lyumkis D

PDB-7u32:
MVV cleaved synaptic complex (CSC) intasome at 3.4 A resolution
Method: single particle / : Shan Z, Pye VE, Cherepanov P, Lyumkis D

EMDB-14453:
MVV strand transfer complex (STC) intasome in complex with LEDGF/p75 at 3.5 A resolution
Method: single particle / : Ballandras-Colas A, Nans A, Cherepanov P

EMDB-25209:
Structure of human SARS-CoV-2 neutralizing antibody C1C-A3 Fab
Method: single particle / : Pan J, Abraham J

EMDB-25210:
Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region)
Method: single particle / : Pan J, Abraham J

PDB-7sn2:
Structure of human SARS-CoV-2 neutralizing antibody C1C-A3 Fab
Method: single particle / : Pan J, Abraham J, Yang P, Shankar S

PDB-7sn3:
Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region)
Method: single particle / : Pan J, Abraham J, Shankar S

EMDB-12286:
Cryo-EM structure of the ternary Netrin 1-Neogenin 1-Repulsive Guidance Molecule B complex
Method: single particle / : Robinson RA, Griffiths SC

PDB-7ndg:
Cryo-EM structure of the ternary complex between Netrin-1, Neogenin and Repulsive Guidance Molecule B
Method: single particle / : Robinson RA, Griffiths SC, van de Haar LL, Malinauskas T, van Battum EY, Zelina P, Schwab RA, Karia D, Malinauskaite L, Brignani S, van den Munkhof M, Dudukcu O, De Ruiter AA, Van den Heuvel DMA, Bishop B, Elegheert J, Aricescu AR, Pasterkamp RJ, Siebold C

EMDB-22891:
SARS-CoV-2 Spike Glycoprotein with one ACE2 Bound
Method: single particle / : Zhang J, Xiao TS

EMDB-22892:
SARS-CoV-2 Spike Glycoprotein with two ACE2 Bound
Method: single particle / : Zhang J, Xiao TS

EMDB-22893:
SARS-CoV-2 Spike Glycoprotein with three ACE2 Bound
Method: single particle / : Zhang J, Xiao TS

EMDB-22894:
SARS-CoV-2 Spike Glycoprotein, prefusion with one RBD up conformation
Method: single particle / : Zhang J, Xiao TS

PDB-7kj2:
SARS-CoV-2 Spike Glycoprotein with one ACE2 Bound
Method: single particle / : Zhang J, Xiao TS, Cai YF, Chen B

PDB-7kj3:
SARS-CoV-2 Spike Glycoprotein with two ACE2 Bound
Method: single particle / : Zhang J, Xiao TS, Cai YF, Chen B

PDB-7kj4:
SARS-CoV-2 Spike Glycoprotein with three ACE2 Bound
Method: single particle / : Zhang J, Xiao TS, Cai YF, Chen B

PDB-7kj5:
SARS-CoV-2 Spike Glycoprotein, prefusion with one RBD up conformation
Method: single particle / : Zhang J, Xiao TS, Cai YF, Chen B

EMDB-10895:
Structure of the flagellar MotAB stator complex from Clostridium sporogenes
Method: single particle / : Lea SM, Deme JC

EMDB-10897:
Structure of ExbBD complex from pseudomonas savastonoi
Method: single particle / : Lea SM, Deme JC, Johnson S

EMDB-10899:
Structure of the flagellar MotAB stator complex from Bacillus subtilis
Method: single particle / : Lea SM, Deme JC

EMDB-10901:
Vibrio mimicus PomA(5)B(2) complex
Method: single particle / : Lea SM, Deme JC, Johnson S

EMDB-10902:
Escherichia coli ExbB(5)D(2) complex
Method: single particle / : Lea SM, Deme JC, Johnson S

PDB-6ysf:
Structure of the flagellar MotAB stator complex from Clostridium sporogenes
Method: single particle / : Lea SM, Deme JC, Johnson SJ

PDB-6ysl:
Structure of the flagellar MotAB stator complex from Bacillus subtilis
Method: single particle / : Lea SM, Deme JC, Johnson SJ

EMDB-1273:
Centrosome polarization delivers secretory granules to the immunological synapse.
Method: electron tomography / : Stinchcombe JC, Majorovits E, Bossi G, Fuller SD, Griffiths GM

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more