[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 107 items for (author: goto & m)

EMDB-65631:
Subtomogram average of MJ1HA S-layer
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-65632:
Subtomogram average of MJ1 attachment organelle
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-61843:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

PDB-9jvq:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

EMDB-37121:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37149:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kd1:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8ke0:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37115:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38443:
193 bp Widom601L nucleosome (closed)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38444:
193 bp Widom601L nucleosome (middle)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38445:
193 bp Widom601L nucleosome (open)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kcy:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-61058:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61059:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61060:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0n:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0o:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0p:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-37440:
Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Method: single particle / : Suzuki K, Mikuriya S, Adachi N, Kawasaki M, Senda T, Moriya T, Murata T

PDB-8wci:
Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Method: single particle / : Suzuki K, Mikuriya S, Adachi N, Kawasaki M, Senda T, Moriya T, Murata T

EMDB-39211:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39221:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39226:
Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-39227:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

PDB-8yf5:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

PDB-8yfe:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

PDB-8yfq:
Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

PDB-8yfr:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-61088:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

EMDB-61091:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

EMDB-61092:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

EMDB-61093:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

EMDB-36663:
rat megalin RAP complex
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36664:
rat megalin
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36692:
rat megalin head
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36693:
rat megalin bodyA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36694:
cryo-EM structure of rat megalin bodyB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36695:
Cryo-EM structure of rat megalin wingA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36696:
rat megalin wingB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36697:
Cryo-EM structure of rat megalin leg
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36698:
rat megalin RAP complex head
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36699:
rat megalin RAP complex bodyA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36700:
rat megalin RAP complex bodyB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36701:
rat megalin RAP complex wingA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36702:
rat megalin RAP complex wingB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36703:
rat megalin RAP complex leg
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jut:
rat megalin RAP complex
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8juu:
rat megalin
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jx8:
rat megalin head
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more