[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 43 items for (author: gates & e)

EMDB-70500:
Cryo-EM structure of bovine phosphodiesterase 6 bound to CB-5083
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

EMDB-70501:
Cryo-EM structure of human p97/VCP bound to inhibitor GND-135
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

PDB-9ohm:
Cryo-EM structure of bovine phosphodiesterase 6 bound to CB-5083
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

PDB-9ohn:
Cryo-EM structure of human p97/VCP bound to inhibitor GND-135
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

PDB-7t3h:
MicroED structure of Dynobactin
Method: electron crystallography / : Yoo BK, Kaiser JT, Rees DC, Miller RD, Iinishi A, Lewis K, Bowman S

EMDB-14242:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S

PDB-7r1w:
E. coli BAM complex (BamABCDE) bound to dynobactin A
Method: single particle / : Jakob RP, Hiller S, Maier T

EMDB-23213:
Cryo-EM structure of Hsp90:FKBP51:p23 closed-state complex
Method: single particle / : Lee K, Thwin AC

EMDB-23214:
Cryo-EM structure of Hsp90:p23 closed-state complex
Method: single particle / : Lee K, Thwin AC

PDB-7l7i:
Cryo-EM structure of Hsp90:FKBP51:p23 closed-state complex
Method: single particle / : Lee K, Thwin AC, Tse E, Gates SN, Southworth DR

PDB-7l7j:
Cryo-EM structure of Hsp90:p23 closed-state complex
Method: single particle / : Lee K, Thwin AC, Tse E, Gates SN, Southworth DR

EMDB-22167:
Cryo-EM map of KSHV ORF68
Method: single particle / : Didychuk AL, Gates SN, Martin A, Glaunsinger B

EMDB-22168:
Cryo-EM structure of EBV BFLF1
Method: single particle / : Didychuk AL, Gates SN, Martin A, Glaunsinger B

PDB-6xfa:
Cryo-EM structure of EBV BFLF1
Method: single particle / : Didychuk AL, Gates SN, Martin A, Glaunsinger B

EMDB-20730:
Cryo-EM structure of p97-A232E mutant bound to cofactors UFD1L and NPLOC4
Method: single particle / : Blythe EE, Gates SN, Deshaies RJ, Martin A

EMDB-20004:
CryoEM map of the hyperactive ClpB mutant K476C, bound to casein, pre-state
Method: single particle / : Rizo AR, Lin JB

EMDB-20005:
CryoEM map of the hyperactive ClpB mutant K476C, bound to casein, post-state
Method: single particle / : Rizo AR, Lin JB

EMDB-20049:
CryoEM focus classification map of the hyperactive ClpB mutant K476C, bound to casein, pre-state
Method: single particle / : Rizo AR, Lin JB

EMDB-20050:
CryoEM focus classification map of the hyperactive ClpB mutant K476C, bound to casein, post-state
Method: single particle / : Rizo AR, Lin JB

EMDB-20051:
CryoEM focus classification map of the hyperactive ClpB mutant K476C, bound to casein, NTD-trimer
Method: single particle / : Rizo AR, Lin JB

PDB-6oax:
Structure of the hyperactive ClpB mutant K476C, bound to casein, pre-state
Method: single particle / : Rizo AR, Lin JB, Gates SN, Tse E, Bart SM, Castellano LM, Dimaio F, Shorter J, Southworth DR

PDB-6oay:
Structure of the hyperactive ClpB mutant K476C, bound to casein, post-state
Method: single particle / : Rizo AR, Lin JB, Gates SN, Tse E, Bart SM, Castellano LM, Dimaio F, Shorter J, Southworth DR

PDB-6og1:
Focus classification structure of the hyperactive ClpB mutant K476C, bound to casein, pre-state
Method: single particle / : Rizo AR, Lin JB, Gates SN, Tse E, Bart SM, Castellano LM, Dimaio F, Shorter J, Southworth DR

PDB-6og2:
Focus classification structure of the hyperactive ClpB mutant K476C, bound to casein, post-state
Method: single particle / : Rizo AR, Lin JB, Gates SN, Tse E, Bart SM, Castellano LM, Dimaio F, Shorter J, Southworth DR

PDB-6og3:
Focus classification structure of the hyperactive ClpB mutant K476C, bound to casein, NTD-trimer
Method: single particle / : Rizo AR, Lin JB, Gates SN, Tse E, Bart SM, Castellano LM, Dimaio F, Shorter J, Southworth DR

EMDB-9042:
Yeast 26S proteasome bound to ubiquitinated substrate (1D* motor state)
Method: single particle / : de la Pena AH, Goodall EA

EMDB-9043:
Yeast 26S proteasome bound to ubiquitinated substrate (5D motor state)
Method: single particle / : de la Pena AH, Goodall EA

EMDB-9044:
Yeast 26S proteasome bound to ubiquitinated substrate (5T motor state)
Method: single particle / : de la Pena AH, Goodall EA

EMDB-9045:
Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)
Method: single particle / : de la Pena AH, Goodall EA

PDB-6ef0:
Yeast 26S proteasome bound to ubiquitinated substrate (1D* motor state)
Method: single particle / : de la Pena AH, Goodall EA, Gates SN, Lander GC, Martin A

PDB-6ef1:
Yeast 26S proteasome bound to ubiquitinated substrate (5D motor state)
Method: single particle / : de la Pena AH, Goodall EA, Gates SN, Lander GC, Martin A

PDB-6ef2:
Yeast 26S proteasome bound to ubiquitinated substrate (5T motor state)
Method: single particle / : de la Pena AH, Goodall EA, Gates SN, Lander GC, Martin A

PDB-6ef3:
Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)
Method: single particle / : de la Pena AH, Goodall EA, Gates SN, Lander GC, Martin A

EMDB-8745:
S. cerevisiae Hsp104:casein complex, Middle Domain Conformation
Method: single particle / : Gates SN, Yokom AL

PDB-5vy9:
S. cerevisiae Hsp104:casein complex, Middle Domain Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

EMDB-8697:
Closed State CryoEM Reconstruction of Hsp104:ATPyS and FITC casein
Method: single particle / : Gates SN

EMDB-8744:
S. cerevisiae Hsp104-ADP complex
Method: single particle / : Gates SN, Yokom AL

EMDB-8746:
S. cerevisiae Hsp104:casein complex, Extended Conformation
Method: single particle / : Gates SN, Yokom AL

PDB-5vjh:
Closed State CryoEM Reconstruction of Hsp104:ATPyS and FITC casein
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vy8:
S. cerevisiae Hsp104-ADP complex
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vya:
S. cerevisiae Hsp104:casein complex, Extended Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

EMDB-8267:
CryoEM Reconstruction of Hsp104 Hexamer
Method: single particle / : Yokom AL, Gates SN

PDB-5kne:
CryoEM Reconstruction of Hsp104 Hexamer
Method: single particle / : Yokom AL, Gates SN, Jackrel ME, Mack KL, Su M, Shorter J, Southworth DR

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more