[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 125 items for (author: gallagher & t)

EMDB-43736:
Umb1 umbrella toxin particle
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w20:
Umb1 umbrella toxin particle
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w22:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-41940:
Human RADX tetramer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

PDB-8u61:
Human RADX tetramer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-41939:
human RADX trimer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-42156:
RADX trimer locally refined map 1
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-42157:
RADX trimer locally refined map 2
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-42162:
RADX trimer consensus map
Method: single particle / : Balakrishnan S, Chazin WJ

PDB-8u5y:
human RADX trimer bound to ssDNA
Method: single particle / : Balakrishnan S, Chazin WJ

EMDB-16308:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (dataset 1)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

EMDB-16314:
Alvinella pompejana nicotinic acetylcholine receptor Alpo in apo state (dataset 2)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

EMDB-16315:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_LMNG_Serotonin dataset 4)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

EMDB-16316:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_comb dataset 3)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

EMDB-16317:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_apo, dataset 1)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

EMDB-16326:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in complex with CHAPS(Alpo4_CHAPS)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

PDB-8bx5:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (dataset 1)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

PDB-8bxb:
Alvinella pompejana nicotinic acetylcholine receptor Alpo in apo state (dataset 2)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

PDB-8bxd:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_LMNG_Serotonin dataset 4)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

PDB-8bxe:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_comb dataset 3)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

PDB-8bxf:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_apo, dataset 1)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

PDB-8byi:
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in complex with CHAPS(Alpo4_CHAPS)
Method: single particle / : De Gieter S, Efremov RG, Ulens C

EMDB-27232:
Subtomogram of Fluad vaccine hemagglutinin spiked nanodisc
Method: electron tomography / : Gallagher JR, Audray AK

EMDB-27233:
Tomogram of Flublok vaccine hemagglutinin starfish complexes
Method: electron tomography / : Gallagher JR, Audray AK

EMDB-26044:
H10ssF: ferritin-based nanoparticle displaying H10 hemagglutinin stabilized stem epitopes
Method: single particle / : Gallagher JR, Harris AK

EMDB-24599:
Tomogram of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein (Fig. 2M,N, Fig 3J, and Supp. Movie 1 of the manuscript Marcink et al., 2021).
Method: electron tomography / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-24600:
Tomogram of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein (Fig. 2K,L, and Supp. Movie 2 of the manuscript Marcink et. al 2021,).
Method: electron tomography / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-24601:
Tomogram of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein (Fig. 4B-E and Supp. Movie 3 of manuscript Marcink et al., 2021).
Method: electron tomography / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-24602:
Tomogram of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein (Fig 2E-G of the manuscript Marcink et al., 2021).
Method: electron tomography / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-24603:
Tomogram of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein (Fig. 3D,E of the manuscript Marcink et al., 2021).
Method: electron tomography / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-24604:
Tomogram of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein (Fig. 4H-J of the manuscript Marcink et al., 2021)
Method: electron tomography / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-26679:
Subtomogram averaged map of hACE2 dimers on the surface of extracellular vesicles
Method: subtomogram averaging / : Marcink TC, Kicmal T, Armbruster E, Zhang Z, Zipursky G, Idris M, Khao J, McGill G, Gallagher T, Porotto M, des Georges A, Moscona A

EMDB-13608:
Focused reconstruction of Haliangium ochraceum encapsulated ferritin cargo within the encapsulin nano compartment
Method: single particle / : Marles-Wright J, Basle A, Ross J, Clarke DJ

PDB-7n2d:
MicroED structure of human zinc finger protein 292 segment (534-542) phased by ARCIMBOLDO-BORGES
Method: electron crystallography / : Richards LS, Flores MD, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

PDB-7n2e:
MicroED structure of human CPEB3 segment (154-161) straight polymorph
Method: electron crystallography / : Flores MD, Richards LS, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

PDB-7n2f:
MicroED structure of human CPEB3 segment (154-161) straight polymorph phased by ARCIMBOLDO-BORGES
Method: electron crystallography / : Flores MD, Richards LS, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

PDB-7n2g:
MicroED structure of human CPEB3 segment(154-161) kinked polymorph phased by ARCIMBOLDO-BORGES
Method: electron crystallography / : Flores MD, Richards LS, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

PDB-7n2i:
MicroED structure of human LECT2 (45-53) phased by ARCIMBOLDO-BORGES
Method: electron crystallography / : Richards LS, Flores MD, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

PDB-7n2j:
MicroED structure of a mutant mammalian prion segment phased by ARCIMBOLDO-BORGES
Method: electron crystallography / : Richards LS, Flores MD, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

PDB-7n2k:
MicroED structure of sequence variant of repeat segment of the yeast prion New1p phased by ARCIMBOLDO-BORGES
Method: electron crystallography / : Flores MD, Richards LS, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

PDB-7n2l:
MicroED structure of a mutant mammalian prion segment
Method: electron crystallography / : Flores MD, Richards LS, Zee CT, Glynn C, Gallagher-Jones M, Sawaya MR

EMDB-12853:
Icosahedral cryo-EM reconstruction of Haliangium ochraceum encapsulin
Method: single particle / : Marles-Wright J, Basle A

PDB-7odw:
Model of Haliangium ochraceum encapsulin from icosahedral single particle reconstruction
Method: single particle / : Marles-Wright J, Basle A, Clarke DJ, Ross J

EMDB-12859:
Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction
Method: single particle / : Marles-Wright J, Basle A

EMDB-12864:
Single particle reconstruction of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction
Method: single particle / : Marles-Wright J, Basle A

EMDB-12873:
Asymmetric single particle reconstruction of the Haliangium ochraceum encapsulin encapsulated ferritin complex
Method: single particle / : Marles-Wright J, Basle A, Ross J, Clarke DJ

EMDB-13603:
Asymmetric single particle reconstruction of the Haliangium ochraceum encapsulin encapsulated ferritin complex calculated using Cryosparc
Method: single particle / : Marles-Wright J, Basle A, Ross J, Clarke DJ

PDB-7oe2:
Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction
Method: single particle / : Marles-Wright J, Basle A, Clarke DJ, Ross J

PDB-7oeu:
Model of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction
Method: single particle / : Marles-Wright J, Basle A, Clarke DJ, Ross J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more