[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 64 items for (author: gagnon & mg)

EMDB-29618:
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (State I-B)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29619:
ApoRF3 bound to an E. coli non-rotated ribosome termination complex, from focused classification and refinement (State I-B)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29620:
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29621:
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29625:
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (State II-A)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29626:
RF3-GDPCP bound to an E. coli non-rotated ribosome termination complex, from focused classification and refinement (State II-A)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29627:
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29628:
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29629:
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (State II-B)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29630:
RF3-GDPCP bound to an E. coli rotated ribosome, from focused classification and refinement (State II-B)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29631:
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29632:
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (State II-C)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29633:
RF3-GDPCP bound to an E. coli rotated ribosome, from focused classification and refinement (State II-C)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29634:
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29622:
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (State I-C)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29623:
RF3-ppGpp bound to an E. coli rotated ribosome, from focused classification and refinement (State I-C)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29624:
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Method: single particle / : Rybak MY, Li L, Lin J, Gagnon MG

EMDB-29819:
Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)
Method: single particle / : Rybak MY, Gagnon MG

EMDB-29820:
Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
Method: single particle / : Rybak MY, Gagnon MG

EMDB-29821:
Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)
Method: single particle / : Rybak MY, Gagnon MG

EMDB-29822:
Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)
Method: single particle / : Rybak MY, Gagnon MG

EMDB-42554:
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42555:
Refined map of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Method: single particle / : Seely SM, Basu R, Gagnon MG

EMDB-42556:
Focus refined map of the swiveled head domain of the 30S subunit of Listeria innocua ribosome (structure I-B)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42557:
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42558:
Refined map of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42559:
Focus refined map of the head domain of the ratcheted 30S subunit of Listeria innocua ribosome (structure II-A)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42560:
Focus refined map of the body domain of the ratcheted 30S subunit of Listeria innocua ribosome (structure II-A)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42561:
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42562:
Refined map of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42563:
Focus refined map of the head domain of the 30S subunit of Listeria innocua ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42564:
Focus refined map of the body domain of the 30S subunit of Listeria innocua ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42565:
Focus refined map of HflXr bound to the Listeria innocua ribosome in complex with HPF and E-site tRNA (structure II-B)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42566:
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42567:
Refined map of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42568:
Focus refined map of the swiveled head domain of the 30S subunit of Listeria innocua ribosome in complex with HflXr and pe/E-tRNA (structure II-C)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42569:
Focus refined map of the body domain of the 30S subunit of Listeria innocua ribosome in complex with HflXr and pe/E-tRNA (structure II-C)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42570:
Focus refined map of HflXr bound to the Listeria innocua ribosome in complex with pe/E-tRNA (structure II-C)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42571:
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42572:
Refined map of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42573:
Focus refined map of the swiveled head domain of the 30S subunit of ratcheted Listeria innocua ribosome in complex with HflXr and pe/E-tRNA (structure II-D)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42574:
Focus refined map of the body domain of the 30S subunit of ratcheted Listeria innocua ribosome in complex with HflXr and pe/E-tRNA (structure II-D)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42575:
Focus refined map of HflXr bound to the ratcheted Listeria innocua ribosome in complex with pe/E-tRNA (structure II-D)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42576:
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-42577:
Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)
Method: single particle / : Seely SM, Basu RS, Gagnon MG

EMDB-19067:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

EMDB-19076:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

EMDB-19077:
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
Method: single particle / : Helena-Bueno K, Rybak MY, Gagnon MG, Hill CH, Melnikov SV

EMDB-43074:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

EMDB-43075:
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
Method: single particle / : Rybak MY, Helena-Bueno K, Hill CH, Melnikov SV, Gagnon MG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more