[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 574 items for (author: gad & m)

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-76895:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76896:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76898:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76899:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76900:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76901:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-54650:
Unliganded dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54651:
Unliganded tetramer of Glycogen phosphorylase from E. coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54658:
Complexed dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54663:
Complexed tetramer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s7v:
Structure of glycogen phosphorylase - dimeric form - from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s86:
Structure of glycogen phosphorylase - tetrameric form - from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s8b:
Structure of glycogen phosphorylase - dimeric form - in complex with HPr from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s8k:
Structure of glycogen phosphorylase - tetrameric form - in complex with HPr from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-48638:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

PDB-9mun:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

EMDB-48699:
Consensus reconstitution of SLC33A1 in complex with a Fv clasp
Method: single particle / : Gad M, Hite RK

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-52860:
Ku70/80 bound to 147 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52861:
Ku70/80 bound to 153 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52879:
Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52912:
Ku70/80 bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52958:
DNA-PK bound to a 153 bp H2AX nucleosome model 1
Method: single particle / : Hall C, Chaplin AK

EMDB-53025:
DNA-PK bound to 153 bp H2AX nucleosome model 2
Method: single particle / : Hall C, Chaplin A

EMDB-53026:
Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-53237:
DNA-PK bound to 153 bp H2AX nucleosome with ATPyS
Method: single particle / : Hall C, Chaplin AK

PDB-9igw:
Ku70/80 bound to 147 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9igx:
Ku70/80 bound to 153 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q80:
Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q8x:
Ku70/80 bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q9f:
DNA-PK bound to a 153 bp H2AX nucleosome model 1
Method: single particle / : Hall C, Chaplin AK

PDB-9qcr:
DNA-PK bound to 153 bp H2AX nucleosome model 2
Method: single particle / : Hall C, Chaplin A

PDB-9qcs:
Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9qms:
DNA-PK bound to 153 bp H2AX nucleosome with ATPyS
Method: single particle / : Hall C, Chaplin AK

EMDB-65234:
CryoEM structure of cyclised H-pilus (D69A)
Method: helical / : Ishimoto N, Beis K

EMDB-65235:
CryoEM structure of cyclised H-pilus (D69N)
Method: helical / : Ishimoto N, Beis K

EMDB-65236:
CryoEM structure of cyclised H-pilus (D69R)
Method: helical / : Ishimoto N, Beis K

EMDB-65250:
CryoEM structure of cyclised H-pilus (D69G)
Method: helical / : Ishimoto N, Beis K

PDB-9vp2:
CryoEM structure of cyclised H-pilus (D69A)
Method: helical / : Ishimoto N, Beis K

PDB-9vp3:
CryoEM structure of cyclised H-pilus (D69N)
Method: helical / : Ishimoto N, Beis K

PDB-9vp4:
CryoEM structure of cyclised H-pilus (D69R)
Method: helical / : Ishimoto N, Beis K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more