[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 304 items for (author: franz & j)

EMDB-53317:
CryoEM structure of the tetrahedral M42 aminopeptidase from M. jannaschii
Method: single particle / : Atalah J, Basbous H, Girard E, Effantin E, Schoehn G, Franzetti B

PDB-9qr6:
CryoEM structure of the tetrahedral M42 aminopeptidase from M. jannaschii
Method: single particle / : Atalah J, Basbous H, Girard E, Effantin E, Schoehn G, Franzetti B

EMDB-55061:
VDAC1 in cMSP1D1 nanodiscs, monomeric.
Method: single particle / : Broutzakis G, Gatsogiannis C

EMDB-55062:
VDAC1 in cMSP1D1 nanodiscs, dimeric.
Method: single particle / : Broutzakis G, Gatsogiannis C

EMDB-55094:
VDAC1 in cMSP1delH5 nanodiscs
Method: single particle / : Broutzakis G, Gatsogiannis C

EMDB-51819:
Cryo-EM structure of YhaM
Method: single particle / : Pane-Farre J, Madej MG, Fu L, Ziegler C, Hinrichs R

PDB-9h3f:
Cryo-EM structure of YhaM
Method: single particle / : Pane-Farre J, Madej MG, Fu L, Ziegler C, Hinrichs R

EMDB-51901:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

PDB-9h6u:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

EMDB-52168:
LysR Type Transcriptional Regulator LsrB from Agrobacterium tumefaciens
Method: single particle / : Elders H, Schmidt JJ, Fiedler R, Hofmann E, Narberhaus F

PDB-9hh1:
LysR Type Transcriptional Regulator LsrB from Agrobacterium tumefaciens
Method: single particle / : Elders H, Schmidt JJ, Fiedler R, Hofmann E, Narberhaus F

EMDB-50781:
Cryo-EM structure of the Nipah virus polymerase (L) bound to the tetrameric phosphoprotein (P)
Method: single particle / : Balikci E, Gunl F, Carrique L, Keown JR, Fodor E, Grimes JM

EMDB-50805:
Cryo-EM structure of the Nipah virus polymerase (L) bound to the tetrameric phosphoprotein (P)- Local map for L
Method: single particle / : Balikci E, Gunl F, Carrique L, Keown JR, Fodor E, Grimes JM

EMDB-50807:
Cryo-EM structure of the Nipah virus polymerase (L) bound to the tetrameric phosphoprotein (P)- Local map for P
Method: single particle / : Balikci E, Gunl F, Carrique L, Keown JR, Fodor E, Grimes JM

EMDB-50808:
Cryo-EM structure of the Nipah virus polymerase (L) bound to the tetrameric phosphoprotein (P) - Consensus Map
Method: single particle / : Balikci E, Gunl F, Carrique L, Keown JR, Fodor E, Grimes JM

PDB-9fux:
Cryo-EM structure of the Nipah virus polymerase (L) bound to the tetrameric phosphoprotein (P)
Method: single particle / : Balikci E, Gunl F, Carrique L, Keown JR, Fodor E, Grimes JM

EMDB-19692:
Hexameric worm glutamate dehydrogenase (N-term. deletion 1-33)
Method: single particle / : Bohnacker S, Bohn S, Sattler M, Esser-von Bieren J

EMDB-19693:
Hexameric worm glutamate dehydrogenase (C136S)
Method: single particle / : Bohnacker S, Bohn S, Sattler M, Esser-von Bieren J

EMDB-18765:
Human 60S ribosomal subunit
Method: single particle / : Wiechert F, Schacherl M, Sprink T

PDB-8qyx:
Human 60S ribosomal subunit
Method: single particle / : Wiechert F, Schacherl M, Sprink T

EMDB-17127:
Cryo-EM structure of human tRNA ligase RTCB in complex with human PYROXD1.
Method: single particle / : Loeff L, Kroupova A, Asanovic I, Boneberg F, Pfleiderer MM, Ferdigg A, Ackle F, Martinez J, Jinek M

PDB-8orj:
Cryo-EM structure of human tRNA ligase RTCB in complex with human PYROXD1.
Method: single particle / : Loeff L, Kroupova A, Asanovic I, Boneberg F, Pfleiderer MM, Ferdigg A, Ackle F, Martinez J, Jinek M

EMDB-18456:
CryoEM map of hexamer worm glutamate dehydrogenase
Method: single particle / : Bohnacker S, Bohn S, Sattler M, Esser-von Bieren J

EMDB-41806:
C-terminal LRRK2 bound to E11 DARPin
Method: single particle / : Sanz-Murillo M, Mathea S, Dederer V, Knapp S, Leschziner A

PDB-8u1b:
C-terminal LRRK2 bound to E11 DARPin
Method: single particle / : Sanz-Murillo M, Mathea S, Dederer V, Knapp S, Leschziner A

EMDB-18779:
Structure of the non-mitochondrial citrate synthase from Ananas comosus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

PDB-8qzp:
Structure of the non-mitochondrial citrate synthase from Ananas comosus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

EMDB-17197:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19108:
Human TPC2 in Complex withAntagonist (R)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

PDB-8ouo:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-16004:
Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

EMDB-19250:
Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

EMDB-19251:
Structure of a first order Sierpinski triangle formed by the H369R mutant of the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

PDB-8bei:
Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

PDB-8rjk:
Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

PDB-8rjl:
Structure of a first order Sierpinski triangle formed by the H369R mutant of the citrate synthase from Synechococcus elongatus
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

EMDB-15529:
Structure of a first level Sierpinski triangle formed by a citrate synthase
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

PDB-8an1:
Structure of a first level Sierpinski triangle formed by a citrate synthase
Method: single particle / : Lo YK, Bohn S, Sendker FL, Schuller JM, Hochberg G

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-17010:
CryoEM Structure INO80core Hexasome complex Rvb core refinement state1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

PDB-8ooc:
CryoEM Structure INO80core Hexasome complex Rvb core refinement state1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-17006:
CryoEM Structure INO80core Hexasome complex composite map state1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-17007:
CryoEM Structure INO80core Hexasome complex ATPase-DNA refinement state1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-17008:
CryoEM Structure INO80core Hexasome complex Hexasome refinement state1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

EMDB-17012:
CryoEM Structure INO80core Hexasome complex Arp5 Ies6 refinement state1
Method: single particle / : Zhang M, Jungblut A, Hoffmann T, Eustermann S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more