[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: ford & bl)

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2t:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2u:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-52019:
Structure of A16/G9 in complex with A56/K2 (vaccinia virus)
Method: single particle / : Vernuccio R, Meola A, Guardado-Calvo P

EMDB-53936:
Structure of A16/G9 in complex with A56/K2 at pH 5.5 (vaccinia virus)
Method: single particle / : Vernuccio R, Battini L, Meola A, Guardado-Calvo P

PDB-9hbk:
Structure of A16/G9 in complex with A56/K2 (vaccinia virus)
Method: single particle / : Vernuccio R, Meola A, Guardado-Calvo P

PDB-9rdh:
Structure of A16/G9 in complex with A56/K2 at pH 5.5 (vaccinia virus)
Method: single particle / : Vernuccio R, Battini L, Meola A, Guardado-Calvo P

EMDB-46649:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9d8v:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42363:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42364:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42365:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42366:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulr:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8uls:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ult:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulu:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-43560:
Cryo-EM structure of a type II ZorAB complex from Sulfuricurvum kujiense
Method: single particle / : Deme JC, Lea SM

EMDB-43561:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, consensus map
Method: single particle / : Deme JC, Lea SM

EMDB-43562:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, PG-binding domain focused map
Method: single particle / : Deme JC, Lea SM

EMDB-43563:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, composite map
Method: single particle / : Deme JC, Lea SM

PDB-8vvi:
Cryo-EM structure of a type II ZorAB complex from Sulfuricurvum kujiense
Method: single particle / : Deme JC, Lea SM

PDB-8vvn:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3
Method: single particle / : Deme JC, Lea SM

EMDB-28534:
Type IIS Restriction Endonuclease PaqCI, DNA bound
Method: single particle / : Kennedy MA, Stoddard BL

EMDB-28596:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

PDB-8etr:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

EMDB-22627:
Negative stain EM map of SARS-COV-2 spike protein (trimer) with Fab COV2-2082
Method: single particle / : Binshtein E, Crowe JE

EMDB-22628:
Negative stain EM map of SARS-COV-2 spike protein (trimer) with Fab COV2-2479
Method: single particle / : Binshtein E, Crowe JE

EMDB-11692:
Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP
Method: single particle / : Naydenova K, Muir KW

PDB-7aap:
Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP
Method: single particle / : Naydenova K, Muir KW, Wu LF, Zhang Z, Coscia F, Peet M, Castro-Hartman P, Qian P, Sader K, Dent K, Kimanius D, Sutherland JD, Lowe J, Barford D, Russo CJ

EMDB-22148:
Negative stain EM map of SARS-COV-2 spike protein open RBD (trimer) with Fab COV2-2096
Method: single particle / : Binshtein E, Crowe JE

EMDB-22149:
Negative stain EM map of SARS-COV-2 spike protein (trimer) with Fab COV2-2832
Method: single particle / : Binshtein E, Crowe JE

EMDB-9063:
Cryo-EM structure of the essential ribosome assembly AAA-ATPase Rix7
Method: single particle / : Lo YH, Sobhany M, Hsu AL, Ford BL, Krahn JM, Borgnia MJ, Stanley RE

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more