[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 52 items for (author: flegler & vj)

EMDB-51813:
YnaI in its open conformation purified in DDM showing ligand-filled pockets
Method: single particle / : Flegler VJ, Bottcher B, Rasmussen T, Rasmussen A, Hedrich R

EMDB-51817:
a YnaI-MscS chimera in a closed conformation purified in DDM with additional lipids showing ligand-filled pore and pockets
Method: single particle / : Flegler VJ, Bottcher B, Rasmussen T, Rasmussen A, Hedrich R

EMDB-51818:
a YnaI-MscS chimera in an open conformation purified in DDM showing ligand-filled pockets
Method: single particle / : Flegler VJ, Bottcher B, Rasmussen T, Rasmussen A, Hedrich R

EMDB-51897:
YnaI in its open conformation, purified in DDM, C1 processed
Method: single particle / : Flegler VJ, Bottcher B, Rasmussen T, Rasmussen A, Hedrich R

EMDB-51898:
A YnaI-MscS chimera in its closed conformation, C1 processed
Method: single particle / : Flegler VJ, Bottcher B, Rasmussen T, Rasmussen A, Hedrich R

EMDB-51953:
YnaI in closed conformation purified in DDM with additional lipids showing ligand-filled pockets
Method: single particle / : Flegler VJ, Bottcher B, Rasmussen T, Rasmussen A, Hedrich R

EMDB-51954:
A YnaI-MscS chimera in its open conformation, C1 processed
Method: single particle / : Flegler VJ, Bottcher B, Rasmussen T, Rasmussen A, Hedrich R

EMDB-52985:
Lymphostatin Conformation II, Hepes buffer pH8 - consensus map
Method: single particle / : Bottcher B, Griessmann M, Schneider R, Rasmussen T

EMDB-52986:
Lymphostatin -Conformation II - Local-Refinement GT-domains
Method: single particle / : Bottcher B, Griessmann M, Schneider R, Rasmussen T

EMDB-52987:
Lymphostatin - Conformation II - pH 8, Hepes, focussed on center
Method: single particle / : Bottcher B, Griessmann M, Schneider R, Rasmussen T

EMDB-52988:
Lymphostatin - Conformation II - pH8 Hepes, focussed on delivery
Method: single particle / : Bottcher B, Griessmann M, Schneider R, Rasmussen T

EMDB-52989:
Lymphostatin - Conformation II - pH 8 Hepes - focussed on C-term
Method: single particle / : Bottcher B, Griessmann M, Schneider R, Rasmussen T

EMDB-52990:
Lymphostatin - Conformation II - pH 8 Hepes
Method: single particle / : Bottcher B, Schneider R, Griessmann M, Ramussen T

EMDB-52991:
Lymphostatin - conformation III - pH 8 focussed on delivery domain
Method: single particle / : Bottcher B, Schneider R, Griessmann M, Ramussen T

EMDB-52992:
Lymphostatin - Conformation III - pH 8 focussed on centre
Method: single particle / : Bottcher B, Schneider R, Griessmann M, Ramussen T

EMDB-52993:
Lymphostatin - Conformation III - pH 8 - focussed on C-term
Method: single particle / : Bottcher B, Schneider R, Griessmann M, Ramussen T

EMDB-52994:
Lymphostatin - conformation III - pH 8 focussed on N-term
Method: single particle / : Bottcher B, Schneider R, Griessmann M, Ramussen T

EMDB-52995:
Lymphostatin - Conformation III - pH 8 - consensus map
Method: single particle / : Bottcher B, Schneider R, Griessmann M, Ramussen T

EMDB-52996:
Lymphostatin - Conformation III - pH 8
Method: single particle / : Bottcher B, Schneider R, Griessmann M, Ramussen T

EMDB-53164:
Lymphostatin - pH8 phosphate buffer - focussed on C-term
Method: single particle / : Griessmann M, Schneider R, Rasmussen T, Bottcher B

EMDB-53165:
Lymphostatin- pH 8.0 phosphate buffer - focussed on delivery domain S1
Method: single particle / : Griessmann M, Schneider R, Rasmussen T, Bottcher B

EMDB-53166:
Lymphostatin - pH 8 phosphate buffer - focussed on centre
Method: single particle / : Griessmann M, Schneider R, Rasmussen T, Bottcher B

EMDB-53167:
Lymphostatin - pH 8.0 phosphate - focussed on GT-domain
Method: single particle / : Griessmann M, Schneider R, Rasmussen T, Bottcher B

EMDB-53168:
Lymphostatin at pH 8 in Phosphate buffer - Consensus Map
Method: single particle / : Griessmann M, Schneider R, Rasmussen T, Bottcher B

EMDB-53169:
Lymphostatin - pH 8 - phosphate buffer
Method: single particle / : Griessmann M, Schneider R, Rasmussen T, Bottcher B

EMDB-53286:
Lymphostatin - Conformation I - pH 6.5 phosphate buffer
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-53287:
Lymphostatin - conformation II - pH 6.5 phosphate buffer
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-19982:
Lymphostatin, conformation 1, N-terminal part
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-19983:
Lymphostatin, conformation 1, local refinement C-terminal part
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-19984:
Lymphostatin, conformation 2, N-terminal part
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-19985:
Lymphostatin, conformation 2 , local refinement C-terminal part
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-19987:
Lymphostatin, conformation 1 (composite structure)
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-19988:
Lymphostatin, conformation 2 (composite structure)
Method: single particle / : Griessmann M, Rasmussen T, Bottcher B

EMDB-12996:
Mechanosensitive channel MscS solubilized with LMNG in open conformation
Method: single particle / : Rasmussen T, Flegler VJ

EMDB-12997:
Mechanosensitive channel MscS solubilized with DDM in closed conformation
Method: single particle / : Rasmussen T, Flegler VJ

EMDB-13003:
Mechanosensitive channel MscS solubilized with DDM in open conformation
Method: single particle / : Rasmussen T, Flegler VJ

EMDB-13006:
Mechanosensitive channel MscS solubilized with DDM in closed conformation with added lipid
Method: single particle / : Rasmussen T, Flegler VJ

EMDB-13007:
Mechanosensitive channel MscS solubilized with LMNG in closed conformation with added lipid
Method: single particle / : Rasmussen T, Flegler VJ

EMDB-13008:
Mechanosensitive channel MscS solubilized with LMNG in open conformation with added lipid
Method: single particle / : Rasmussen T, Flegler VJ

EMDB-11557:
YnaI
Method: single particle / : Flegler VJ, Rasmussen A

EMDB-11560:
YnaI in an open-like conformation
Method: single particle / : Flegler VJ, Rasmussen A

EMDB-11556:
small conductance mechanosensitive channel YnaI mutant G149A/G152A
Method: single particle / : Flegler VJ, Rasmussen A, Rao S, Wu N, Zenobi R, Sansom MSP, Hedrich R, Rasmussen T, Boettcher B

EMDB-11558:
mechanosensitive channel YnaI in amphipol A8-35
Method: single particle / : Flegler VJ, Rasmussen A, Rao S, Wu N, Zenobi R, Sansom MSP, Hedrich R, Rasmussen T, Boettcher B

EMDB-11559:
mechanosensitive channel YnaI in a closed-like conformation
Method: single particle / : Flegler VJ, Rasmussen A, Rao S, Wu N, Zenobi R, Sansom MSP, Hedrich R, Rasmussen T, Boettcher B

EMDB-11561:
mechanosensitive channel YnaI in an intermediate conformation
Method: single particle / : Flegler VJ, Rasmussen A, Rao S, Wu N, Zenobi R, Sansom MSP, Hedrich R, Rasmussen T, Boettcher B

EMDB-11629:
small conductance mechanosensitive channel YbiO
Method: single particle / : Flegler VJ, Rasmussen A

EMDB-4919:
STRUCTURE OF THE MECHANOSENSITIVE CHANNEL MSCS EMBEDDED IN THE MEMBRANE BILAYER
Method: single particle / : Rasmussen T, Flegler VJ

EMDB-4413:
Tobacco Mosaic Virus
Method: helical / : Song B, Flegler V

EMDB-4414:
beta-galactosidase (integrating mode)
Method: single particle / : Song B, Flegler V

EMDB-4415:
beta-galactosidase (counting mode)
Method: single particle / : Song B, Flegler V

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more