[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 534 items for (author: dick & m)

EMDB-53246:
Consensus refinement: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homo dimers of Akirin-2. Focussed refinement
Method: single particle / : Brunner HL, Grundmann L, Haslelbach D

EMDB-53248:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on Importin-9 and Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53264:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on the alpha subunits, Ipo-9 and Ak2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53265:
Composite map: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53266:
Binary complex of human Importin-9 with one homodimer of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qno:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on Importin-9 and Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qon:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on the alpha subunits, Ipo-9 and Ak2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qoo:
Composite model: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qop:
Binary complex of human Importin-9 with one homodimer of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qej:
Cryo-EM structure of the Importin beta:Importin7:Histone H1.0 complex
Method: single particle / : Neumann P

PDB-9qf0:
Cryo-EM structure of the mportin7:Histone H1.0 complex
Method: single particle / : Neumann P, Dickmanns A

EMDB-48430:
SPA of purified HIV-1 CA protein in vitro assembled with IP6 (mature morphology). 50 uM LEN was added post assembly.
Method: single particle / : Ricana CL, Dick RA

EMDB-45440:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

PDB-9cca:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

EMDB-48183:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48184:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48185:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48186:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48187:
Antibody fragments from mAb21 and mAb475 bound to the fimbrial tip protein, FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-71842:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me4:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me5:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me6:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me7:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9ptm:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-72145:
Nucleotide-free structure of PmtCD in detergent LMNG
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

EMDB-72169:
Nucleotide-free structure of PmtCD in nanodisc
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

EMDB-72172:
Nucleotide-free structure of PmtCD in peptidisc
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

EMDB-72173:
ADP-bound structure of PmtCD in peptidisc
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

PDB-9q1y:
Nucleotide-free structure of PmtCD in detergent LMNG
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

PDB-9q2n:
Nucleotide-free structure of PmtCD in nanodisc
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

PDB-9q2q:
Nucleotide-free structure of PmtCD in peptidisc
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

PDB-9q2r:
ADP-bound structure of PmtCD in peptidisc
Method: single particle / : Worrall LJ, Li FKK, Hu J, Lazarski AC, Strynadka NCJ

EMDB-71559:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

PDB-9pee:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-51777:
Structure of DPS determined at 13K in 100 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

EMDB-51778:
Structure of DPS determined at 81K in 100 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

EMDB-51779:
Structure of apoferritin determined at 13K in 100 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Crusso CJ

EMDB-51780:
Structure of apoferritin determined at 81K in 100 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

EMDB-51781:
Structure of apoferritin determined at 13K in 100 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

EMDB-51782:
Structure of apoferritin determined at 81K in 100 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

EMDB-51783:
Structure of apoferritin determined at 13K in 300 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

EMDB-51784:
Structure of apoferritin determined at 81K in 300 nm diameter holes.
Method: single particle / : Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

EMDB-40922:
Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: open duplex DNA (rPTCo)
Method: single particle / : Brewer JJ, Darst SA, Campbell EA

EMDB-40930:
Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: closed duplex DNA (rPTCc)
Method: single particle / : Brewer JJ, Darst SA, Campbell EA

EMDB-40931:
Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: unwinding duplex DNA (rPTCi)
Method: single particle / : Brewer JJ, Darst SA, Campbell EA

EMDB-40943:
E. coli Sw2/Snf2 ATPase RapA bound to both ADP-AlF3 and reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA
Method: single particle / : Brewer JJ, Darst SA, Campbell EA

PDB-8szw:
Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: open duplex DNA (rPTCo)
Method: single particle / : Brewer JJ, Darst SA, Campbell EA

PDB-8t00:
Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: closed duplex DNA (rPTCc)
Method: single particle / : Brewer JJ, Darst SA, Campbell EA

PDB-8t02:
Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: unwinding duplex DNA (rPTCi)
Method: single particle / : Brewer JJ, Darst SA, Campbell EA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more