[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 73 items for (author: di & trani & j)

EMDB-52134:
double helical p62/SQSTM1 filament
Method: helical / : Berkamp S, Jungbluth L, Katranidis A, Mostafavi S, Sachse C

PDB-9hge:
PB1 domain of p62/SQSTM1
Method: helical / : Berkamp S, Jungbluth L, Katranidis A, Mostafavi S, Sachse C

EMDB-46995:
Mycobacterial supercomplex malate:quinone oxidoreductase assembly
Method: single particle / : Di Trani JM, Rubinstein JL

PDB-9dm1:
Mycobacterial supercomplex malate:quinone oxidoreductase assembly
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-47123:
Cryo-EM structure of Mycobacterium smegmatis ATP synthase rotational state 1 in inverted membrane vesicles - F1 region
Method: single particle / : Courbon GM, Rubinstein JL

EMDB-47124:
Cryo-EM structure of Mycobacterium smegmatis ATP synthase rotational state 1 in inverted membrane vesicles
Method: single particle / : Courbon GM, Rubinstein JL

EMDB-19963:
III2IV respiratory supercomplex from Saccharomyces cerevisiae
Method: single particle / : Wu F, Di Trani JM, Rubinstein JL, Brzezinski P, Moe A

EMDB-19964:
III2IV respiratory supercomplex from Saccharomyces cerevisiae (consensus map)
Method: single particle / : Wu F, Di Trani JM, Rubinstein JL, Brzezinski P, Moe A

EMDB-19965:
Local refinement of CIII2 from Saccharomyces cerevisiae
Method: single particle / : Wu F, Di Trani JM, Rubinstein JL, Brzezinski P, Moe A

EMDB-19966:
Local refinement of CIV from Saccharomyces cerevisiae
Method: single particle / : Wu F, Di Trani JM, Rubinstein JL, Brzezinski P, Moe A

PDB-9etz:
III2IV respiratory supercomplex from Saccharomyces cerevisiae
Method: single particle / : Moe A, Brzezinski P

EMDB-44351:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, V1
Method: single particle / : Coupland EM, Rubinstein JL

PDB-9b8p:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, V1
Method: single particle / : Coupland EM, Rubinstein JL

EMDB-44350:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44352:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, peripheral stalks
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44353:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44354:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 2
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-44355:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 1
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9b8o:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9b8q:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, peripheral stalks
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9brb:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 1
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9brc:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 2
Method: single particle / : Coupland CE, Rubinstein JL

PDB-9brd:
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3
Method: single particle / : Coupland CE, Rubinstein JL

EMDB-40601:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40625:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40626:
cytochrome bc1 complex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40627:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa (Locally refined cytochrome cbb3)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40637:
cytochrome bc1 complex from Pseudomonas aeruginosa (Locally refined bc1 monomer with Rieske head domain in b state)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40638:
cytochrome bc1 complex from Pseudomonas aeruginosa (Locally refined bc1 monomer with Rieske head domain in c state)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40643:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa (Locally refined cytochrome cbb3 with CcoP1 isoform)
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-40645:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa (Locally refined cytochrome cbb3 with CcoP2 isoform)
Method: single particle / : Di Trani JM, Rubinstein JL

PDB-8smr:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

PDB-8snh:
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-28754:
Client-bound structure of a DegP trimer within a 12mer cage
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

EMDB-28781:
Structure of a 12mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

EMDB-28800:
Structure of an 18mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

EMDB-28801:
Structure of a 24mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

EMDB-28806:
Structure of a 30mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

EMDB-28808:
Structure of a 60mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

PDB-8f0a:
Client-bound structure of a DegP trimer within a 12mer cage
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

PDB-8f0u:
Structure of a 12mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

PDB-8f1t:
Structure of an 18mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

PDB-8f1u:
Structure of a 24mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

PDB-8f21:
Structure of a 30mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

PDB-8f26:
Structure of a 60mer DegP cage bound to the client protein hTRF1
Method: single particle / : Harkness RW, Ripstein ZA, Di Trani JM, Kay LE

EMDB-27196:
Mammalian CIV with GDN bound
Method: single particle / : Di Trani J, Rubinstein J

PDB-8d4t:
Mammalian CIV with GDN bound
Method: single particle / : Di Trani J, Rubinstein J

EMDB-24482:
Complex III2 from Candida albicans, inhibitor free
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-24483:
Complex III2 from Candida albicans, inhibitor free, Rieske head domain in b position
Method: single particle / : Di Trani JM, Rubinstein JL

EMDB-24484:
Complex III2 from Candida albicans, inhibitor free, Rieske head domain in intermediate position
Method: single particle / : Di Trani JM, Rubinstein JL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more