[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 38 items for author: deng & b

EMDB-3726:
BtubABC mini microtubule
Method: helical / : Deng X, Bharat TAM

PDB-5o09:
BtubABC mini microtubule
Method: helical / : Deng X, Bharat TAM, Lowe J

EMDB-8398:
Single particle cryo-EM reconstruction of the Salmonella SPI-1 type III secretion injectisome basal body at 4.3 Angstrom resolution
Method: single particle / : Worrall LJ, Hong C

EMDB-8399:
Single particle cryo-EM reconstruction of the Salmonella SPI-1 type III secretion injectisome secretin InvG at 3.6 Angstrom resolution
Method: single particle / : Worrall LJ, Hong C

EMDB-8400:
6.3 Angstrom structure of the Salmonella SPI-1 type III secretion injectisome basal body
Method: single particle / : Worrall LJ, Hong C

EMDB-8401:
Single particle cryo-EM reconstruction of the Salmonella SPI-1 type III secretion injectisome secretin InvG at 4.4 Angstrom resolution
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5tcp:
Near-atomic resolution cryo-EM structure of the periplasmic domains of PrgH and PrgK
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5tcq:
Near-atomic resolution cryo-EM structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5tcr:
Atomic model of the Salmonella SPI-1 type III secretion injectisome basal body proteins InvG, PrgH, and PrgK
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

EMDB-2546:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

EMDB-2547:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

PDB-4ckg:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

PDB-4ckh:
Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
Method: helical / : Pang XY, Fan J, Zhang Y, Zhang K, Gao BQ, Ma J, Li J, Deng YC, Zhou QJ, Hsu V, Sun F

EMDB-5500:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5501:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5502:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5503:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5504:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5506:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5507:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5508:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5509:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5510:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j28:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j29:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2a:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2b:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2c:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2d:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2e:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2f:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2g:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

PDB-3j2h:
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Method: single particle / : Guo Q, Goto S, Chen Y, Muto A, Himeno H, Deng H, Lei J, Gao N

EMDB-5345:
CryoEM Structure of the Human Propionyl-CoA Carboxylase
Method: single particle / : Zhou ZH, Deng B, Shen Y, Tong L

EMDB-1445:
Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation.
Method: subtomogram averaging / : Deng B, O'Connor CM, Kedes DH, Zhou ZH

EMDB-1446:
Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation.
Method: subtomogram averaging / : Deng B, O'Connor CM, Kedes DH, Zhou ZH

EMDB-1447:
Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation.
Method: subtomogram averaging / : Deng B, O'Connor CM, Kedes DH, Zhou ZH

EMDB-1320:
Direct visualization of the putative portal in the Kaposi's sarcoma-associated herpesvirus capsid by cryoelectron tomography.
Method: subtomogram averaging / : Deng B, O'Connor CM, Kedes DH, Zhou ZH

+
About EMN search

-
News

-
Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

+
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more