[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 28,338 items for (author: de & i)

EMDB-54428:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54446:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 2.8A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54907:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3.3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54908:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 4.2A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9s0z:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9s1e:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 2.8A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9shp:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3.3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9shq:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 4.2A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-70159:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

PDB-9o65:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

EMDB-72189:
Structure of the Borna Disease Virus 1 L and co-factor P Protein in an apo state
Method: single particle / : Ogino T, Chakrapani S, Gibbs E, Ogino M

PDB-9q3a:
Structure of the Borna Disease Virus 1 L and co-factor P Protein in an apo state
Method: single particle / : Ogino T, Chakrapani S, Gibbs E, Ogino M

EMDB-49161:
CryoEM structure of U7 Sm Ring in complex with symplekin N-terminal domain
Method: single particle / : Desotell A, Tong L

EMDB-49206:
CRYO-EM STRUCTURE OF human U7 SNRNP WITH MUTANT LSM11 that disrupts contacts with CPSF73
Method: single particle / : Desotell A, Tong L

EMDB-49389:
CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED H2A* SUBSTRATE PRE-MRNA FOCUS MAP
Method: single particle / : Desotell A, Tong L

EMDB-49402:
CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (core region)
Method: single particle / : Desotell A, Tong L

EMDB-49403:
CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (COMPOSITE MAP)
Method: single particle / : Desotell A, Tong L

PDB-9n96:
CRYO-EM STRUCTURE OF human U7 SM RING IN COMPLEX WITH SYMPLEKIN N-TERMINAL DOMAIN
Method: single particle / : Desotell A, Tong L

PDB-9nb1:
CRYO-EM STRUCTURE OF human U7 SNRNP WITH MUTANT LSM11 that disrupts contacts with CPSF73
Method: single particle / : Desotell A, Tong L

PDB-9ngo:
CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (FOCUS MAP)
Method: single particle / : Desotell A, Tong L

PDB-9nh5:
CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (core region)
Method: single particle / : Desotell A, Tong L

PDB-9nh6:
CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (COMPOSITE MAP)
Method: single particle / : Desotell A, Tong L

EMDB-62892:
Human KCNQ2-CaM in complex with QO-58
Method: single particle / : Zhao YW, Yang ZN, Du XN, Guo JT

PDB-9l8w:
Human KCNQ2-CaM in complex with QO-58
Method: single particle / : Zhao YW, Yang ZN, Du XN, Guo JT

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-70277:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

PDB-9oaa:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

EMDB-53065:
Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
Method: single particle / : Kovalova T, Krol S, Brzezinski P, Hogbom M

PDB-9qef:
Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
Method: single particle / : Kovalova T, Krol S, Brzezinski P, Hogbom M

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-66366:
Cryo-EM structure of the hexameric DRT6
Method: single particle / : Wang Y, Deng Z

PDB-9wy8:
Cryo-EM structure of the hexameric DRT6
Method: single particle / : Wang Y, Deng Z

EMDB-67630:
Cryo-EM map of SARS-CoV-2 spike complexed with Fab 12C2
Method: single particle / : Deng Z, Zhao H, Yu F

EMDB-47570:
DH726-1 Fab bound to hemagglutinin from influenza A/Solomon Islands/3/2006
Method: single particle / : Finney J, Harrison SC, Walsh Jr RM, Kelsoe G

EMDB-52552:
Photosynthetic A8B8 glyceraldehyde-3-phosphate dehydrogenase (minor conformer) from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

EMDB-53632:
ssRNA-containing helical virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53633:
RNA-free helical (h8.7) virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53634:
RNA-free helical (h9.7) virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53635:
RNA-free stacked-ring (r10) virus-like particle composed of PVA coat protein with 5 mutations (H89Q, E90S, S144E, K180E, and T210R)
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53636:
RNA-free helical (h8.5) virus-like particle composed of PVA coat protein with R163A mutation
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53638:
ssRNA-containing helical virus-like particle composed of PVY coat protein with Q87H mutation
Method: helical / : Koritnik N, Kezar A, Podobnik M

EMDB-53639:
RNA-free helical (h8.5) virus-like particle composed of PVY coat protein with Q87H mutation
Method: helical / : Koritnik N, Kezar A, Podobnik M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more