[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,330 items for (author: dai & w)

EMDB-65064:
cryoEM structure of retron-Eco7 complex
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

PDB-9vhe:
cryoEM structure of retron-Eco7 complex
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

EMDB-64501:
Structure of Fks1 in complex with YMR295C
Method: single particle / : Li JL, Zhu AQ, Wang X, Yan CY, Deng D

EMDB-64502:
Structure of dimeric FKS1 in complex with tRNA
Method: single particle / : Li JL, Zhu AQ, Liu JX, Dai XL, Wang X, Yan CY, Deng D

PDB-9utu:
Structure of Fks1 in complex with YMR295C
Method: single particle / : Li JL, Zhu AQ, Wang X, Yan CY, Deng D

PDB-9utw:
Structure of dimeric FKS1 in complex with tRNA
Method: single particle / : Li JL, Zhu AQ, Liu JX, Dai XL, Wang X, Yan CY, Deng D

EMDB-62848:
Structure of Ro60 dimer from Thermus phage phiLo
Method: single particle / : Hu Z, Huang Y

PDB-9l5y:
Structure of Ro60 dimer from Thermus phage phiLo
Method: single particle / : Hu Z, Huang Y

EMDB-62386:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62453:
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62454:
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62535:
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62671:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62679:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kkf:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kn5:
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kn6:
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9krp:
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kzu:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kzx:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-65052:
cryoEM structure of ptuA-ptuB complex in Retron-Eco7 anti-phage system
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

PDB-9vh1:
cryoEM structure of ptuA-ptuB complex in Retron-Eco7 anti-phage system
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

EMDB-70867:
DDB1-CRBN with Ikaros(ZF2) and DEG-47: composite map and model submission
Method: single particle / : Rizvi Z, Lander GC

EMDB-62399:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

PDB-9kl3:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

EMDB-62276:
Cryo-EM structure of LIPID-mediated dimer of human norepinephrine transporter NET in the presence of Vanoxerine in an inward-open state at resolution of 2.52 angstrom
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-62281:
Cryo-EM structure of LIPID-mediated human norepinephrine transporter NET in the presence of Levomilnacipran in an inward-open state at resolution of 2.46 angstrom.
Method: single particle / : Zhang H, Jiang Y, Xu EH

EMDB-62289:
Cryo-EM structure of lipid-mediated dimer of human norepinephrine transporter NET in the presence of the F3288-0031 in an inward-open state at resolution of 3.1 angstrom
Method: single particle / : Zhang H, Zhang TW, Xu EH, Jiang Y

PDB-9kdh:
Cryo-EM structure of LIPID-mediated dimer of human norepinephrine transporter NET in the presence of Vanoxerine in an inward-open state at resolution of 2.52 angstrom
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-9kdm:
Cryo-EM structure of LIPID-mediated human norepinephrine transporter NET in the presence of Levomilnacipran in an inward-open state at resolution of 2.46 angstrom.
Method: single particle / : Zhang H, Jiang Y, Xu EH

PDB-9ke3:
Cryo-EM structure of lipid-mediated dimer of human norepinephrine transporter NET in the presence of the F3288-0031 in an inward-open state at resolution of 3.1 angstrom
Method: single particle / : Zhang H, Zhang TW, Xu EH, Jiang Y

EMDB-70733:
Structure of the sweet receptor bound to sucralose in the loose state, extracellular domain
Method: single particle / : Wang H, Chen X, Dai Y, Lee CH

PDB-9oq1:
Structure of the sweet receptor bound to sucralose in the loose state, extracellular domain
Method: single particle / : Wang H, Chen X, Dai Y, Lee CH

EMDB-70776:
DDB1-CRBN open NU refine map
Method: single particle / : Rizvi Z, Lander GC

EMDB-70777:
DDB1-CRBN open local refinement
Method: single particle / : Rizvi Z, Lander GC

EMDB-70778:
DDB1-CRBNopen with lenalidomide
Method: single particle / : Rizvi Z, Lander GC

EMDB-70781:
DDB1-CRBN intermediate NU
Method: single particle / : Rizvi Z, Lander GC

EMDB-70782:
DDB1-CRBN[Closed] with lenalidomide and SB-405483- consensus refinement
Method: single particle / : Rizvi Z, Lander GC

EMDB-70783:
DDB1-CRBN[Closed] with lenalidomide and SB-405483- Focused refine map
Method: single particle / : Rizvi Z, Lander GC

EMDB-70784:
Composite map of DDB1-CRBN[Closed] in the presence of Lenalidomide and SB-405483
Method: single particle / : Rizvi Z, Lander GC

EMDB-70788:
DDB1-CRBN-CK1a with lenalidomide and SB-405483
Method: single particle / : Rizvi Z, Lander GC

EMDB-70789:
DDB1-CRBN-CK1a with lenalidomide and SB-405483 (Focused map)
Method: single particle / : Rizvi Z, Lander GC

EMDB-70790:
DDB1-CRBN with casein kinase 1 alpha, lenalidomide, and SB-405483: composite map submission
Method: single particle / : Rizvi Z, Lander GC

EMDB-70795:
DDB1-CRBN with Ikaros ZF2-3, lenalidomide, and SB-405483: Consensus map
Method: single particle / : Rizvi Z, Lander GC

EMDB-70796:
DDB1-CRBN with Ikaros(ZF2-3), lenalidomide, and SB-405483: focused map submission
Method: single particle / : Rizvi Z, Lander GC

EMDB-70799:
DDB1-CRBN with Ikaros ZF2-3, lenalidomide, and SB-405483; composite map submission
Method: single particle / : Rizvi Z, Lander GC

EMDB-70801:
DDB1-CRBN with CK1a and DEG47
Method: single particle / : Rizvi Z, Lander GC

EMDB-70802:
DDB1-CRBN with CK1a and DEG-47: focused map on CRBN
Method: single particle / : Rizvi Z, Lander GC

EMDB-70803:
DDB1-CRBN with CK1A and DEG-47: Focused map on CK1a
Method: single particle / : Rizvi Z, Lander GC

EMDB-70804:
DDB1-CRBN with CK1a and DEG47: Composite map submission
Method: single particle / : Rizvi Z, Lander GC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more