[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: cross & ja)

EMDB-18562:
Release Complex: BAM bound EspP and Extended SurA
Method: single particle / : Fenn KL, Ranson NA

EMDB-18053:
Release Complex: BAM bound EspP and Compact SurA
Method: single particle / : Fenn KL, Ranson NA

EMDB-18034:
Wait Complex: Lateral open BAM bound Compact SurA
Method: single particle / : Fenn KL, Ranson NA

EMDB-18035:
Wait Complex: Lateral open BAM bound Extended SurA
Method: single particle / : Fenn KL, Ranson NA

EMDB-18045:
Wait Complex: BAM bound Darobactin-B and Compact SurA
Method: single particle / : Fenn KL, Ranson NA

EMDB-18046:
Wait Complex: BAM bound Darobactin-B and Extended SurA
Method: single particle / : Fenn KL, Ranson NA

EMDB-18543:
Release Complex: BAM bound EspP (SurA released)
Method: single particle / : Fenn KL, Ranson NA

EMDB-18563:
Handover Complex: BAM bound OmpX and extended SurA
Method: single particle / : Fenn KL, Ranson NA

EMDB-18564:
Arrival Complex: Lateral open BAM bound extended SurA plus OmpX
Method: single particle / : Fenn KL, Ranson NA

EMDB-18570:
CryoEM structure of recombinant DeltaN7 alpha-synuclein in PBS
Method: helical / : Thacker D, Wilkinson M, Dewison KM, Ranson NA, Brockwell DJ, Radford SE

PDB-8qpz:
CryoEM structure of recombinant DeltaN7 alpha-synuclein in PBS
Method: helical / : Thacker D, Wilkinson M, Dewison KM, Ranson NA, Brockwell DJ, Radford SE

EMDB-15343:
Negative stain EM structure of the compact conformer of kinesin-1 (Kif5C/KLC1).
Method: single particle / : Weijman JF, Yadav KNS, Surridge KJ, Cross JA, Borucu U, Mantell J, Woolfson DN, Schaffitzel C, Dodding MP

EMDB-25471:
Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound
Method: single particle / : Milligan JC, Yu X

PDB-7swd:
Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound
Method: single particle / : Milligan JC, Yu X, Saphire EO

EMDB-23488:
Hendra virus receptor binding protein in complex with HENV-103 and HENV-117 Fabs
Method: single particle / : Binshtein E, Crowe JE

EMDB-23719:
EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs
Method: single particle / : Murin CD, Ward AB

PDB-7m8l:
EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs
Method: single particle / : Murin CD, Ward AB

EMDB-12095:
Cryo-EM structure of mitochondrial complex I from Mus musculus inhibited by IACS-2858 at 3.0 A
Method: single particle / : Chung I, Hirst J

PDB-7b93:
Cryo-EM structure of mitochondrial complex I from Mus musculus inhibited by IACS-2858 at 3.0 A
Method: single particle / : Chung I, Hirst J

EMDB-22884:
Structure of the NiV F glycoprotein in complex with the 12B2 neutralizing antibody
Method: single particle / : Dang HV, Veesler D

EMDB-22885:
Structure of the HeV F glycoprotein in complex with the 1F5 neutralizing antibody
Method: single particle / : Dang HV, Veesler D

PDB-7ki4:
Structure of the NiV F glycoprotein in complex with the 12B2 neutralizing antibody
Method: single particle / : Dang HV, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-7ki6:
Structure of the HeV F glycoprotein in complex with the 1F5 neutralizing antibody
Method: single particle / : Dang HV, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-23156:
SARS-CoV 2 Spike Protein bound to LY-CoV555
Method: single particle / : Goldsmith JA, McLellan JS

PDB-7l3n:
SARS-CoV 2 Spike Protein bound to LY-CoV555
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-11997:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

PDB-7b3y:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

EMDB-20293:
EBOV GPdTM (Mayinga) in complex with rEBOV-548 Fab
Method: single particle / : Ward AB, Turner HL, Murin CD

EMDB-20301:
EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs
Method: single particle / : Ward AB, Murin CD

EMDB-20947:
EBOV GPdMuc Makona bound to rEBOV-548 Fab
Method: single particle / : Murin CD, Ward AB

PDB-6pci:
EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs
Method: single particle / : Ward AB, Murin CD, Alkutkar T

PDB-6uye:
EBOV GPdMuc Makona bound to rEBOV-548 Fab
Method: single particle / : Murin CD, Ward AB

PDB-6s8m:
S. pombe microtubule decorated with Cut7 motor domain in the AMPPNP state
Method: single particle / : Moores CA, von Loeffelholz O

EMDB-3527:
S. pombe microtubule decorated with Cut7 motor domain in the AMPPNP state
Method: single particle / : Moores CA, von Loeffelholz O

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more