[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 146 items for (author: cohen & de)

EMDB-71513:
SARS-CoV-2 Wuhan-Hu-1/BA.1 spike heterotrimer (HT2) with 3-'down' RBDs
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-71514:
SARS-CoV-2 Wuhan-Hu-1/BA.1 spike heterotrimer (HT2) with 1-'up' RBD
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-71515:
SARS-CoV-2 Wuhan-Hu-1/BA.1/Delta spike heterotrimer (HT3) with 3-'down' RBDs
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-71516:
SARS-CoV-2 Wuhan-Hu-1/BA.1/Delta spike heterotrimer (HT3) with 1-'up' RBD
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-48347:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-A10 Fab
Method: single particle / : Fan C, Bjorkman PJ

EMDB-48348:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-B8 Fab
Method: single particle / : Fan C, Bjorkman PJ

EMDB-48349:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-C9 Fab
Method: single particle / : Fan C, Bjorkman PJ

EMDB-48350:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-C10 Fab
Method: single particle / : Fan C, Bjorkman PJ

PDB-9ml4:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-A10 Fab
Method: single particle / : Fan C, Bjorkman PJ

PDB-9ml5:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-B8 Fab
Method: single particle / : Fan C, Bjorkman PJ

PDB-9ml6:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-C9 Fab
Method: single particle / : Fan C, Bjorkman PJ

PDB-9ml7:
Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-C10 Fab
Method: single particle / : Fan C, Bjorkman PJ

PDB-9hmf:
Periplasmic scaffold of the Campylobacter jejuni flagellar motor (alpha carbon trace)
Method: single particle / : Drobnic T, Beeby M

EMDB-17415:
Campylobacter jejuni flagellar motor, pflC deletion
Method: subtomogram averaging / : Drobnic T, Alzheimer M, Svensson S, Sharma CS, Beeby M

EMDB-17416:
Campylobacter jejuni flagellar motor, pflD deletion
Method: subtomogram averaging / : Drobnic T, Henderson LD, Alzheimer M, Svensson S, Sharma CM, Beeby M

EMDB-17417:
Campylobacter jejuni flagellar motor, truncated PflA (d16-168)
Method: subtomogram averaging / : Drobnic T, Nans A, Rosenthal PB, Beeby M

EMDB-17419:
Campylobacter jejuni flagellar motor, FlgQ-mCherry fusion
Method: subtomogram averaging / : Drobnic T, Hendrixson DR, Beeby M

EMDB-19642:
Campylobacter jejuni bacterial flagellar C-ring
Method: subtomogram averaging / : Beeby M

EMDB-17769:
Subtomogram average of the Campylobacter jejuni motor with basal disk genes, flgPQ, expressed at very low level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17770:
Subtomogram average of the Campylobacter jejuni flagellar motor with the basal disk genes, flgPQ, expressed at low level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17771:
Subtomogram average of the Campylobacter jejuni flagellar motor with the basal disk genes, flgPQ, expressed at medium level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17772:
Subtomogram average of the Campylobacter jejuni motor with the basal disk genes, flgPQ, expressed at high level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17773:
Subtomogram average of the Campylobacter jejuni flgP S69A E157A K159A (flgP-AAA) flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17774:
Subtomogram average of the Campylobacter jejuni flgP Del18-62 flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17775:
Subtomogram average of the Campylobacter jejuni flgPQ deletion flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17776:
Subtomogram average of the Campylobacter jejuni DflgPQ D0661 DkpsD DpglAB flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-18274:
Subtomogram average of the Campylobacter jejuni FlgP-Lpp55 flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-16723:
Wild-type Campylobacter jejuni flagellar motor, in situ
Method: single particle / : Drobnic T, Cohen EJ, Calcraft T, Singh NK, Nans A, Rosenthal PB, Beeby M

EMDB-16724:
Periplasmic scaffold of the Campylobacter jejuni flagellar motor
Method: single particle / : Drobnic T, Cohen EJ, Singh NK, Umrekar TR, Nans A, Rosenthal PB, Beeby M

EMDB-27077:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle
Method: single particle / : Liou SH, Delagrave S, Swanson K

EMDB-43009:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle expressed in HEK293
Method: single particle / : Rajendra B, Swanson K

PDB-8cyg:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle
Method: single particle / : Liou SH, Delagrave S, Swanson K

PDB-8v7x:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle expressed in HEK293
Method: single particle / : Rajendra B, Swanson K

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.
Method: single particle / : Acharya P, Parsons R, Janowska K, Williams WB, Alam M, Haynes BF

EMDB-43931:
CryoEM structure of activated CRAF/MEK/14-3-3 complex with NST-628
Method: single particle / : Quade B, Cohen SE, Huang X

EMDB-43932:
Activated CRAF/MEK heterotetramer from focused refinement of CRAF/MEK/14-3-3 complex
Method: single particle / : Quade B, Cohen SE, Huang X

PDB-9axa:
CryoEM structure of activated CRAF/MEK/14-3-3 complex with NST-628
Method: single particle / : Quade B, Cohen SE, Huang X

PDB-9axc:
Activated CRAF/MEK heterotetramer from focused refinement of CRAF/MEK/14-3-3 complex
Method: single particle / : Quade B, Cohen SE, Huang X

EMDB-27550:
Subtomogram average of the HN/F fusion complex on authentic viral surfaces of HPIV3
Method: subtomogram averaging / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-27551:
Subtomogram average of the PIA174 Fab/F complex on authentic viral surfaces of HPIV3
Method: subtomogram averaging / : Marcink TC, Cheng W, Porotto M, des Georges A, Moscona A

EMDB-34806:
SARS-CoV-2 Delta Spike in complex with FP-12A
Method: single particle / : Chen X, Wu YM

EMDB-34807:
SARS-CoV-2 Delta Spike in complex with IS-9A
Method: single particle / : Mohapatra A, Wu YM

EMDB-34808:
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Method: single particle / : Chen X, Mohapatra A, Wu YM

PDB-8hhx:
SARS-CoV-2 Delta Spike in complex with FP-12A
Method: single particle / : Chen X, Wu YM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more