[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,409 items for (author: berger & b)

PDB-9swa:
Adenovirus dodecahedron
Method: single particle / : Kabasakal BV, Buzas D, Bufton J, Berger-Schaffitzel C, Berger I

PDB-9sy5:
Engineering the ADDomer Nanoparticle Vaccine Scaffold for Improved Assembly and Enhanced Stability.
Method: single particle / : Balchin G, Berger-Schaffitzel C, Berger I

EMDB-63669:
Consensus map of human UHRF1 bound to mononucleosome with hemimethylated DNA at superhelical location -6.2.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63670:
The focused refinement map of the TTD-PHD domain of UHRF1 bound to a mononucleosome with hemimethylated DNA at superhelical location -6.2.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63671:
The SRA domain of human UHRF1 bound to a mononucleosome with hemimethylated DNA at superhelical location -6.2.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63672:
The RING domain of human UHRF1 bound to a mononucleosome in its pre-active state.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63673:
Human UHRF1 bound to a mononucleosome with hemimethylated DNA at superhelical location -5.6.
Method: single particle / : Naschberger A, Baradarn R

EMDB-63674:
Human UHRF1 bound to a mononucleosome with hemimethylation at superhelical location -6.2 and a Histone H3K9me3 methylation mark.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63675:
Human UHRF1 bound to a mononucleosome with a hemimethylation site in the linker DNA.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63676:
UHRF1 bound to a mononucleosome in its pre-active state, with the RING domain bound to the SRA domain.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

EMDB-63677:
The activated state of human UHRF1 bound to a mononucleosome, with the finger loop ordered and linker 4 disordered.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

PDB-9m76:
UHRF1 bound to a mononucleosome in its pre-active state, with the RING domain bound to the SRA domain.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

PDB-9m77:
The activated state of human UHRF1 bound to a mononucleosome, with the finger loop ordered and linker 4 disordered.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

EMDB-49972:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70206:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-70232:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70239:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70259:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o0g:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Berger JM

PDB-9o7o:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o8p:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Berger JM

PDB-9o8z:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Berger JM

PDB-9o9m:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-47792:
Structure of full length AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

EMDB-47793:
Structure of AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 (LBD-TMD) in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

PDB-9e9d:
Structure of full length AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

PDB-9e9e:
Structure of AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 (LBD-TMD) in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

EMDB-66639:
In situ structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-66640:
In situ structure of bacterial 50S ribosomes (CP)
Method: single particle / : Wu F, Naschberger A

EMDB-66736:
In vitro structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-66749:
In vitro structure of bacterial 50S ribosomes(CP)
Method: single particle / : Wu F, Naschberger A

EMDB-66841:
Plunge frozen map of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-52518:
Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

PDB-9hyu:
Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

EMDB-52499:
FCPe region focused map
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

EMDB-52501:
SOD region focused map
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

EMDB-52507:
PsaI Nterm region focused map
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

EMDB-52508:
Consensus map of PSI complex from Chromera velia
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

EMDB-52514:
FCPa region focused map
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

EMDB-52517:
FCPe region focused map
Method: single particle / : Yuan X, Qian P, Sobotka R, Naschberger A

EMDB-44633:
Cryo-EM structure of apo NVL
Method: single particle / : Cruz VE, Erzberger JP

EMDB-44634:
Cryo-EM structure of NVL bound the the MM017 inhibitor
Method: single particle / : Cruz VE, Erzberger JP

PDB-9bji:
Cryo-EM structure of apo NVL
Method: single particle / : Cruz VE, Erzberger JP

PDB-9bjj:
Cryo-EM structure of NVL bound the the MM017 inhibitor
Method: single particle / : Cruz VE, Erzberger JP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more